Case | Control |
---|---|
91082 | 369112 |
An abnormality of the urinary bladder. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 4502 | 23024 | 196.2 | 1.385e-44 | 0.794 |
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 13724 | 49569 | 174.9 | 6.322e-40 | 1.141 |
chr15:48392165 | rs1834640 | - | A>G | 5311 | 26313 | 170.4 | 6.116e-39 | 0.8196 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 13156 | 47936 | 144.9 | 2.304e-33 | 1.13 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 13321 | 48640 | 140.8 | 1.756e-32 | 1.128 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 12016 | 55042 | 139.0 | 4.463e-32 | 0.8846 |
chr6:170242949 | rs9396958 | - | T>C | 2585 | 13529 | 135.9 | 2.053e-31 | 0.7777 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 10154 | 46838 | 130.6 | 3.05e-30 | 0.8794 |
chr1:236085940 | rs12038310 | - | C>T | 2458 | 12818 | 125.4 | 4.153e-29 | 0.7806 |
chr5:54280007 | rs1508890 | ESM1 | C>A | 3037 | 15379 | 119.7 | 7.302e-28 | 0.8036 |
chr15:45491394 | rs1648299 | SHF | T>C | 2823 | 14336 | 114.0 | 1.297e-26 | 0.8016 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 3227 | 16150 | 113.3 | 1.824e-26 | 0.8132 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 3696 | 18247 | 113.0 | 2.182e-26 | 0.8242 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 2341 | 12122 | 112.2 | 3.169e-26 | 0.7865 |
chr23:128718936 | rs2362937 | OCRL | T>C | 3368 | 16583 | 111.6 | 4.472e-26 | 0.8174 |
chr10:45243171 | rs10900107 | - | T>C | 4220 | 20525 | 109.5 | 1.247e-25 | 0.8363 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 3020 | 15125 | 107.3 | 3.827e-25 | 0.8124 |
chr9:140957557 | rs11137360 | CACNA1B | A>G | 3540 | 17466 | 107.3 | 3.9e-25 | 0.8249 |
chr5:147671850 | rs7724380 | - | G>A | 3392 | 16791 | 106.6 | 5.362e-25 | 0.8221 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 2767 | 13973 | 105.7 | 8.742e-25 | 0.8065 |
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 13246 | 47356 | 174.4 | 8.223e-40 | 1.144 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 12630 | 45478 | 147.8 | 5.178e-34 | 1.135 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 12664 | 45626 | 146.1 | 1.24e-33 | 1.134 |
chr2:44073881 | rs6544713 | ABCG8 | C>T | 57100 | 238344 | 59.97 | 9.619e-15 | 0.9573 |
chr2:44074431 | rs4245791 | ABCG8 | T>C | 57665 | 240676 | 59.76 | 1.07e-14 | 0.9575 |
chr6:26472114 | rs9358945 | BTN2A1 | A>G | 33647 | 141162 | 40.25 | 2.234e-10 | 0.9582 |
chr6:26481642 | rs7756567 | - | T>G | 33641 | 141116 | 39.85 | 2.736e-10 | 0.9584 |
chr6:26478927 | rs9358946 | - | G>A | 33664 | 141183 | 39.53 | 3.222e-10 | 0.9586 |
chr6:26474044 | rs7773938 | BTN2A1 | C>T | 33588 | 140882 | 39.51 | 3.265e-10 | 0.9586 |
chr6:26495099 | rs2093169 | - | C>T | 33612 | 140935 | 39.38 | 3.485e-10 | 0.9587 |
chr6:26469875 | rs9358944 | BTN2A1 | A>C | 33635 | 141025 | 38.98 | 4.273e-10 | 0.9589 |
chr2:44081042 | rs4077440 | ABCG8 | C>T | 78420 | 323699 | 38.87 | 4.531e-10 | 0.9676 |
chr6:26474571 | rs56296968 | BTN2A1 | C>T | 33539 | 140636 | 38.75 | 4.814e-10 | 0.959 |
chr6:26573631 | rs13214027 | - | C>G | 25082 | 105813 | 38.42 | 5.696e-10 | 0.9542 |
chr6:26467182 | rs3799380 | BTN2A1 | T>C | 35418 | 148272 | 37.71 | 8.217e-10 | 0.9603 |
chr6:26617306 | rs9393737 | - | G>A | 38148 | 159447 | 37.27 | 1.026e-09 | 0.9616 |
chr6:26634040 | rs9295702 | - | T>C | 37811 | 158041 | 36.75 | 1.34e-09 | 0.9617 |
chr6:26646521 | rs13195210 | ZNF322 | C>T | 38046 | 158964 | 36.65 | 1.413e-09 | 0.9619 |
chr6:26510748 | rs3799383 | - | C>T | 23919 | 100917 | 36.55 | 1.486e-09 | 0.9544 |
chr6:26663478 | rs7740197 | - | A>G | 38632 | 161343 | 36.01 | 1.959e-09 | 0.9624 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:67424352 | rs11901629 | - | C>A | 8869 | 559 | 23.32 | 1.373e-06 | 0.8055 |
chr9:36867191 | rs117405347 | PAX5 | A>G | 3100 | 221 | 22.87 | 1.737e-06 | 0.7153 |
chr5:97561429 | rs115704882 | - | G>A | 2402 | 175 | 21.38 | 3.766e-06 | 0.6952 |
chr12:33533374 | rs10732554 | SYT10 | T>C | 79140 | 3834 | 21.01 | 4.579e-06 | 1.102 |
chr5:178707831 | rs74293437 | ADAMTS2 | A>G | 8229 | 515 | 20.32 | 6.561e-06 | 0.8107 |
chr4:33643529 | rs113646043 | - | A>T | 4514 | 300 | 19.46 | 1.026e-05 | 0.7662 |
chr3:60482652 | rs114857806 | FHIT | G>C | 4284 | 286 | 19.06 | 1.266e-05 | 0.7636 |
chr7:10426456 | rs12532295 | - | T>C | 19958 | 891 | 19.02 | 1.295e-05 | 1.169 |
chr9:104945143 | rs320210 | - | C>A | 63262 | 3452 | 19.0 | 1.31e-05 | 0.9097 |
chr21:37302870 | rs117148388 | RUNX1 | A>G | 8035 | 500 | 18.35 | 1.842e-05 | 0.8169 |
chr7:124466240 | rs117859333 | POT1 | T>C | 4580 | 302 | 18.34 | 1.851e-05 | 0.7729 |
chr9:72694541 | rs867595 | MAMDC2 | T>G | 20802 | 1204 | 18.33 | 1.853e-05 | 0.8734 |
chr11:23774619 | rs143819678 | - | C>T | 6505 | 412 | 18.31 | 1.879e-05 | 0.8012 |
chr2:28464198 | rs28997579 | BABAM2 | C>T | 3765 | 254 | 18.26 | 1.93e-05 | 0.756 |
chr7:10472275 | rs10952210 | - | C>T | 21346 | 960 | 18.13 | 2.065e-05 | 1.159 |
chr1:11788564 | rs4846033 | - | G>A | 2551 | 181 | 18.12 | 2.074e-05 | 0.7197 |
chr9:106619257 | rs79786162 | - | C>A | 9562 | 397 | 18.06 | 2.138e-05 | 1.248 |
chr2:80734826 | rs1368900 | CTNNA2 | A>G | 78914 | 4263 | 18.04 | 2.163e-05 | 0.9152 |
chr5:129053848 | rs72792845 | ADAMTS19 | G>A | 4488 | 296 | 17.99 | 2.225e-05 | 0.7728 |
chr4:103174819 | rs192068 | SLC39A8 | A>G | 81102 | 3947 | 17.96 | 2.255e-05 | 1.094 |
chr9:36867191 | rs117405347 | PAX5 | A>G | 3051 | 218 | 23.44 | 1.288e-06 | 0.7105 |
chr2:67424352 | rs11901629 | - | C>A | 7903 | 501 | 22.92 | 1.691e-06 | 0.7976 |
chr11:23774619 | rs143819678 | - | C>T | 6382 | 409 | 20.87 | 4.916e-06 | 0.7884 |
chr5:97561429 | rs115704882 | - | G>A | 2240 | 164 | 20.83 | 5.027e-06 | 0.6903 |
chr12:33533374 | rs10732554 | SYT10 | T>C | 77004 | 3716 | 20.29 | 6.65e-06 | 1.103 |
chr7:124466240 | rs117859333 | POT1 | T>C | 4497 | 298 | 19.46 | 1.028e-05 | 0.7654 |
chr5:129053848 | rs72792845 | ADAMTS19 | G>A | 4379 | 291 | 19.36 | 1.084e-05 | 0.7635 |
chr3:60482652 | rs114857806 | FHIT | G>C | 4203 | 279 | 18.41 | 1.783e-05 | 0.7645 |
chr4:33643529 | rs113646043 | - | A>T | 4333 | 286 | 18.2 | 1.988e-05 | 0.7682 |
chr2:28464198 | rs28997579 | BABAM2 | C>T | 3703 | 249 | 18.03 | 2.172e-05 | 0.7552 |
chr4:158640682 | rs13134917 | - | T>C | 3114 | 214 | 17.89 | 2.337e-05 | 0.7399 |
chr4:103174819 | rs192068 | SLC39A8 | A>G | 76145 | 3684 | 17.73 | 2.549e-05 | 1.096 |
chr19:5753116 | rs2050588 | CATSPERD | T>C | 33289 | 1860 | 17.6 | 2.726e-05 | 0.8941 |
chr1:156880190 | rs41273213 | PEAR1 | C>A | 4696 | 306 | 17.58 | 2.751e-05 | 0.7781 |
chr4:7991669 | rs16841536 | ABLIM2 | G>A | 3381 | 229 | 17.51 | 2.861e-05 | 0.7496 |
chr10:75702560 | rs75755296 | - | A>G | 7852 | 486 | 17.5 | 2.873e-05 | 0.8183 |
chr7:41050856 | rs73688224 | - | A>G | 4388 | 288 | 17.38 | 3.065e-05 | 0.7735 |
chr20:50672822 | rs117356132 | ZFP64 | T>C | 2071 | 150 | 17.35 | 3.11e-05 | 0.7024 |
chr9:106619257 | rs79786162 | - | C>A | 9212 | 381 | 17.3 | 3.186e-05 | 1.248 |
chr17:33700578 | rs9303685 | SLFN11 | T>C | 79401 | 4260 | 17.15 | 3.45e-05 | 0.9154 |