Case | Control |
---|---|
101074 | 359120 |
An abnormality of the mouth. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:396321 | rs12203592 | IRF4 | C>T | 45902 | 155303 | 100.6 | 1.123e-23 | 1.062 |
chr6:421281 | rs62389423 | - | G>A | 37410 | 126626 | 78.64 | 7.457e-19 | 1.059 |
chr11:44843134 | rs11038167 | TSPAN18 | A>C | 1975 | 8474 | 58.4 | 2.136e-14 | 0.8256 |
chr3:181586376 | rs10937067 | - | G>A | 2643 | 10883 | 47.51 | 5.469e-12 | 0.8605 |
chr13:74144529 | rs9573252 | - | C>G | 4217 | 16827 | 46.86 | 7.62e-12 | 0.8878 |
chr16:30628333 | rs12447859 | ZNF689 | G>A | 2581 | 10518 | 42.98 | 5.52e-11 | 0.8651 |
chr18:77563334 | rs11665567 | - | G>A | 45188 | 155577 | 41.65 | 1.091e-10 | 1.04 |
chr1:169510139 | rs13306334 | F5 | G>A | 2266 | 9342 | 41.39 | 1.246e-10 | 0.8596 |
chr16:30823047 | rs4889490 | - | G>T | 80479 | 291521 | 40.66 | 1.815e-10 | 0.9683 |
chr19:49214470 | rs281380 | - | T>C | 75902 | 275178 | 40.54 | 1.925e-10 | 0.968 |
chr2:26113913 | rs78404020 | - | A>G | 2730 | 11087 | 40.25 | 2.237e-10 | 0.8725 |
chr17:38364764 | rs55673000 | - | C>T | 33340 | 114143 | 40.14 | 2.368e-10 | 1.044 |
chr17:38489170 | rs2715554 | RARA | A>G | 32060 | 109701 | 39.59 | 3.137e-10 | 1.044 |
chr6:93667780 | rs9363020 | - | G>A | 2354 | 9637 | 39.06 | 4.106e-10 | 0.8656 |
chr5:95194445 | rs57525142 | - | G>A | 5383 | 20978 | 38.25 | 6.219e-10 | 0.9087 |
chr1:54009583 | rs41363049 | GLIS1 | C>T | 2568 | 10431 | 38.04 | 6.936e-10 | 0.8723 |
chr2:108088349 | rs2377892 | - | G>A | 2776 | 11218 | 38.01 | 7.023e-10 | 0.8768 |
chr6:170602429 | rs17860704 | DLL1 | T>C | 2301 | 9417 | 37.97 | 7.199e-10 | 0.8659 |
chr16:30546488 | rs6565191 | ZNF747 | G>A | 86087 | 300022 | 37.96 | 7.239e-10 | 1.031 |
chr16:30536918 | rs10871453 | ZNF768 | C>G | 86095 | 300237 | 37.69 | 8.276e-10 | 1.031 |
chr6:396321 | rs12203592 | IRF4 | C>T | 45321 | 153594 | 97.33 | 5.867e-23 | 1.062 |
chr6:421281 | rs62389423 | - | G>A | 36864 | 125001 | 75.12 | 4.429e-18 | 1.058 |
chr17:38364764 | rs55673000 | - | C>T | 31729 | 108735 | 37.92 | 7.388e-10 | 1.044 |
chr17:38489170 | rs2715554 | RARA | A>G | 31255 | 107147 | 36.66 | 1.404e-09 | 1.043 |
chr18:77563334 | rs11665567 | - | G>A | 43232 | 149274 | 34.84 | 3.588e-09 | 1.037 |
chr6:475489 | rs12210050 | - | C>T | 41785 | 144211 | 34.03 | 5.417e-09 | 1.037 |
chr7:114015707 | rs12705960 | FOXP2 | A>C | 99355 | 347777 | 33.38 | 7.585e-09 | 1.03 |
chr1:201884952 | rs2819348 | LMOD1 | T>C | 72294 | 252214 | 28.9 | 7.632e-08 | 1.029 |
chr16:30823047 | rs4889490 | - | G>T | 77546 | 280289 | 28.72 | 8.344e-08 | 0.9726 |
chr13:58265596 | rs9597588 | PCDH17 | A>G | 46880 | 162480 | 28.67 | 8.6e-08 | 1.033 |
chr16:30536918 | rs10871453 | ZNF768 | C>G | 82099 | 287195 | 27.86 | 1.302e-07 | 1.027 |
chr17:38544624 | rs2715555 | - | G>A | 29430 | 101274 | 27.38 | 1.673e-07 | 1.038 |
chr11:47625046 | rs7123576 | - | C>T | 7784 | 25886 | 27.1 | 1.933e-07 | 1.071 |
chr7:114223723 | rs1229761 | FOXP2 | A>C | 66920 | 242196 | 27.06 | 1.974e-07 | 0.9726 |
chr25:155183483 | rs73237015 | - | G>A | 36525 | 133417 | 27.03 | 2.005e-07 | 0.9666 |
chr18:77573548 | rs4799088 | - | A>G | 57105 | 198780 | 27.0 | 2.031e-07 | 1.03 |
chr16:30546488 | rs6565191 | ZNF747 | G>A | 81660 | 285551 | 26.82 | 2.233e-07 | 1.027 |
chr4:140867514 | rs797090 | MAML3 | A>G | 73837 | 266841 | 26.6 | 2.501e-07 | 0.9734 |
chr1:201869257 | rs2820312 | LMOD1 | G>A | 69207 | 241546 | 26.42 | 2.741e-07 | 1.028 |
chr16:30174926 | rs6565176 | - | C>T | 99181 | 347783 | 26.39 | 2.797e-07 | 1.026 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:396321 | rs12203592 | IRF4 | C>T | 45321 | 80196 | 37.43 | 9.454e-10 | 1.042 |
chr6:421281 | rs62389423 | - | G>A | 36864 | 65063 | 34.72 | 3.815e-09 | 1.043 |
chr25:155183483 | rs73237015 | - | G>A | 36525 | 68820 | 27.63 | 1.471e-07 | 0.9631 |
chr16:30514723 | rs4243232 | ITGAL | T>C | 102079 | 183942 | 26.56 | 2.552e-07 | 1.029 |
chr8:10818657 | rs11250099 | XKR6 | G>A | 95307 | 171750 | 23.73 | 1.108e-06 | 1.027 |
chr17:47718188 | rs10853111 | SPOP | G>A | 83095 | 154333 | 23.68 | 1.139e-06 | 0.973 |
chr4:48459365 | rs6447636 | - | C>T | 95624 | 177234 | 23.4 | 1.314e-06 | 0.9735 |
chr16:30154740 | rs9924308 | - | G>A | 101156 | 182480 | 22.56 | 2.037e-06 | 1.027 |
chr16:30174926 | rs6565176 | - | C>T | 99181 | 178872 | 22.38 | 2.238e-06 | 1.027 |
chr8:9154065 | rs330081 | - | A>C | 89278 | 165601 | 22.27 | 2.37e-06 | 0.974 |
chr17:38364764 | rs55673000 | - | C>T | 31729 | 56264 | 22.03 | 2.686e-06 | 1.037 |
chr8:9125730 | rs73199666 | - | C>A | 67915 | 126441 | 21.79 | 3.041e-06 | 0.973 |
chr17:38489170 | rs2715554 | RARA | A>G | 31255 | 55424 | 21.7 | 3.187e-06 | 1.036 |
chr8:11045161 | rs7819412 | XKR6 | A>G | 98694 | 178078 | 21.01 | 4.571e-06 | 1.026 |
chr8:9042454 | rs11249905 | - | A>G | 74182 | 133311 | 21.0 | 4.593e-06 | 1.027 |
chr6:29918436 | rs2508037 | - | C>T | 85690 | 154313 | 20.81 | 5.081e-06 | 1.026 |
chr16:30125840 | rs7542 | MAPK3 | G>C | 88140 | 163405 | 20.56 | 5.793e-06 | 0.975 |
chr6:29916505 | rs417162 | - | T>C | 85915 | 154743 | 20.25 | 6.778e-06 | 1.026 |
chr8:41667681 | rs75663018 | ANK1 | G>T | 2887 | 5817 | 20.16 | 7.125e-06 | 0.9021 |
chr20:34025756 | rs143384 | GDF5 | A>G | 80529 | 149468 | 20.11 | 7.305e-06 | 0.975 |