0000174

Case	Control
6919	453275

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr4:6423001	rs73206177	PPP2R2C	T>C	434	21751	29.44	5.775e-08	1.305
chr3:194568377	rs7645319	-	C>G	854	47305	22.79	1.811e-06	1.185
chr9:7977878	rs77754412	-	C>A	421	34375	22.53	2.073e-06	0.7901
chr1:3680056	rs56079032	CCDC27	G>A	549	29306	21.53	3.479e-06	1.226
chr5:135028674	rs11242261	SLC25A48	A>C	2111	150749	21.24	4.059e-06	0.8966
chr4:34575432	rs113996668	-	T>C	551	29502	21.18	4.186e-06	1.223
chr4:2140090	rs11940893	POLN	T>C	651	35492	20.39	6.304e-06	1.2
chr11:44886593	rs835749	TSPAN18	C>G	3432	208454	20.36	6.422e-06	1.093
chr10:34248860	rs11592799	-	T>G	5902	401418	20.17	7.078e-06	0.9268
chr6:148851309	rs6570862	SASH1	T>C	1248	91461	20.16	7.133e-06	0.8749
chr8:66931909	rs74430076	-	G>A	631	34392	20.03	7.627e-06	1.201
chr3:172138803	rs520306	-	T>C	1699	99481	19.94	8.011e-06	1.123
chr7:145279883	rs17169760	-	T>C	1532	110838	19.91	8.138e-06	0.8859
chr11:14988545	rs117456639	CALCB	A>T	244	11929	19.82	8.487e-06	1.336
chr6:148830398	rs33951897	SASH1	C>T	982	73183	19.74	8.858e-06	0.8627
chr18:59589803	rs17702506	PIGN	C>A	823	62081	19.45	1.034e-05	0.8529
chr4:142973823	rs80320220	INPP4B	G>A	670	36909	18.87	1.396e-05	1.189
chr10:52127451	rs10508927	SGMS1	A>G	2690	188604	18.71	1.525e-05	0.9113
chr4:129382079	rs6534682	-	G>T	3285	228148	18.68	1.546e-05	0.9175
chr3:140598514	rs78555646	-	C>G	221	10744	18.66	1.563e-05	1.343
chr4:6423001	rs73206177	PPP2R2C	T>C	427	21351	31.35	2.154e-08	1.319
chr4:34575432	rs113996668	-	T>C	543	28907	24.01	9.588e-07	1.241
chr4:2140090	rs11940893	POLN	T>C	549	29325	23.16	1.494e-06	1.235
chr1:3680056	rs56079032	CCDC27	G>A	535	28674	21.91	2.856e-06	1.231
chr8:66931909	rs74430076	-	G>A	620	33871	21.0	4.59e-06	1.209
chr4:142973823	rs80320220	INPP4B	G>A	657	36240	20.09	7.371e-06	1.198
chr11:14988545	rs117456639	CALCB	A>T	240	11806	19.78	8.67e-06	1.338
chr7:92498414	rs1005882	-	G>A	456	24310	19.71	9.028e-06	1.237
chr5:135028674	rs11242261	SLC25A48	A>C	1893	136542	19.7	9.058e-06	0.8953
chr18:59589803	rs17702506	PIGN	C>A	801	61031	19.56	9.75e-06	0.8505
chr8:10145383	rs78213044	MSRA	A>C	1559	113480	19.47	1.024e-05	0.8875
chr10:134710733	rs75527485	CFAP46	A>G	417	22106	18.85	1.417e-05	1.243
chr9:89187357	rs12005437	-	G>A	686	52508	18.2	1.993e-05	0.8453
chr10:34248860	rs11592799	-	T>G	5666	387734	17.94	2.277e-05	0.9288
chr1:186849416	rs12720519	PLA2G4A	G>A	1099	63683	17.84	2.4e-05	1.143
chr10:52127451	rs10508927	SGMS1	A>G	2570	181575	17.81	2.442e-05	0.9113
chr23:6187026	rs55984002	-	T>C	449	24895	17.72	2.553e-05	1.227
chr9:7977878	rs77754412	-	C>A	409	32899	17.71	2.579e-05	0.8089
chr13:85472508	rs75254612	-	G>T	473	25580	17.71	2.575e-05	1.219
chr4:95601696	rs6532502	-	C>T	5656	386425	17.64	2.669e-05	0.9294

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds ratio

chr4:6423001

rs73206177

PPP2R2C

T>C

434

21751

29.44

5.775e-08

1.305

chr3:194568377

rs7645319

-

C>G

854

47305

22.79

1.811e-06

1.185

chr9:7977878

rs77754412

-

C>A

421

34375

22.53

2.073e-06

0.7901

chr1:3680056

rs56079032

CCDC27

G>A

549

29306

21.53

3.479e-06

1.226

chr5:135028674

rs11242261

SLC25A48

A>C

2111

150749

21.24

4.059e-06

0.8966

chr4:34575432

rs113996668

-

T>C

551

29502

21.18

4.186e-06

1.223

chr4:2140090

rs11940893

POLN

T>C

651

35492

20.39

6.304e-06

1.2

chr11:44886593

rs835749

TSPAN18

C>G

3432

208454

20.36

6.422e-06

1.093

chr10:34248860

rs11592799

-

T>G

5902

401418

20.17

7.078e-06

0.9268

chr6:148851309

rs6570862

SASH1

T>C

1248

91461

20.16

7.133e-06

0.8749

chr8:66931909

rs74430076

-

G>A

631

34392

20.03

7.627e-06

1.201

chr3:172138803

rs520306

-

T>C

1699

99481

19.94

8.011e-06

1.123

chr7:145279883

rs17169760

-

T>C

1532

110838

19.91

8.138e-06

0.8859

chr11:14988545

rs117456639

CALCB

A>T

244

11929

19.82

8.487e-06

1.336

chr6:148830398

rs33951897

SASH1

C>T

982

73183

19.74

8.858e-06

0.8627

chr18:59589803

rs17702506

PIGN

C>A

823

62081

19.45

1.034e-05

0.8529

chr4:142973823

rs80320220

INPP4B

G>A

670

36909

18.87

1.396e-05

1.189

chr10:52127451

rs10508927

SGMS1

A>G

2690

188604

18.71

1.525e-05

0.9113

chr4:129382079

rs6534682

-

G>T

3285

228148

18.68

1.546e-05

0.9175

chr3:140598514

rs78555646

-

C>G

221

10744

18.66

1.563e-05

1.343

chr4:6423001

rs73206177

PPP2R2C

T>C

427

21351

31.35

2.154e-08

1.319

chr4:34575432

rs113996668

-

T>C

543

28907

24.01

9.588e-07

1.241

chr4:2140090

rs11940893

POLN

T>C

549

29325

23.16

1.494e-06

1.235

chr1:3680056

rs56079032

CCDC27

G>A

535

28674

21.91

2.856e-06

1.231

chr8:66931909

rs74430076

-

G>A

620

33871

21.0

4.59e-06

1.209

chr4:142973823

rs80320220

INPP4B

G>A

657

36240

20.09

7.371e-06

1.198

chr11:14988545

rs117456639

CALCB

A>T

240

11806

19.78

8.67e-06

1.338

chr7:92498414

rs1005882

-

G>A

456

24310

19.71

9.028e-06

1.237

chr5:135028674

rs11242261

SLC25A48

A>C

1893

136542

19.7

9.058e-06

0.8953

chr18:59589803

rs17702506

PIGN

C>A

801

61031

19.56

9.75e-06

0.8505

chr8:10145383

rs78213044

MSRA

A>C

1559

113480

19.47

1.024e-05

0.8875

chr10:134710733

rs75527485

CFAP46

A>G

417

22106

18.85

1.417e-05

1.243

chr9:89187357

rs12005437

-

G>A

686

52508

18.2

1.993e-05

0.8453

chr10:34248860

rs11592799

-

T>G

5666

387734

17.94

2.277e-05

0.9288

chr1:186849416

rs12720519

PLA2G4A

G>A

1099

63683

17.84

2.4e-05

1.143

chr10:52127451

rs10508927

SGMS1

A>G

2570

181575

17.81

2.442e-05

0.9113

chr23:6187026

rs55984002

-

T>C

449

24895

17.72

2.553e-05

1.227

chr9:7977878

rs77754412

-

C>A

409

32899

17.71

2.579e-05

0.8089

chr13:85472508

rs75254612

-

G>T

473

25580

17.71

2.575e-05

1.219

chr4:95601696

rs6532502

-

C>T

5656

386425

17.64

2.669e-05

0.9294

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr4:6423001	rs73206177	PPP2R2C	T>C	427	4336	29.8	4.798e-08	1.323
chr4:2140090	rs11940893	POLN	T>C	549	5885	24.86	6.172e-07	1.254
chr4:34575432	rs113996668	-	T>C	543	5855	23.68	1.137e-06	1.249
chr1:3680056	rs56079032	CCDC27	G>A	535	5760	23.36	1.344e-06	1.249
chr13:63352571	rs9570731	-	C>T	5748	80376	21.4	3.734e-06	0.9206
chr18:59589803	rs17702506	PIGN	C>A	801	12560	21.26	4.018e-06	0.8412
chr4:129382079	rs6534682	-	G>T	3127	44913	20.78	5.142e-06	0.9085
chr4:95601696	rs6532502	-	C>T	5656	79002	19.61	9.483e-06	0.9237
chr4:142973823	rs80320220	INPP4B	G>A	657	7355	19.6	9.531e-06	1.203
chr6:148830398	rs33951897	SASH1	C>T	923	14232	19.54	9.85e-06	0.8561
chr4:62800554	rs2305339	ADGRL3	A>G	3597	44932	19.38	1.072e-05	1.093
chr14:84194617	rs78603638	-	C>A	89	729	19.35	1.086e-05	1.633
chr8:10145383	rs78213044	MSRA	A>C	1559	23171	19.33	1.102e-05	0.8851
chr4:62800728	rs734644	ADGRL3	C>T	3593	44881	19.21	1.172e-05	1.092
chr6:29394926	rs9257857	OR5V1	C>T	2274	27831	18.7	1.531e-05	1.109
chr6:148851309	rs6570862	SASH1	T>C	1166	17579	18.59	1.624e-05	0.8727
chr9:89187357	rs12005437	-	G>A	686	10748	18.27	1.914e-05	0.8415
chr13:94879070	rs879515	GPC6	T>C	2845	35235	18.12	2.071e-05	1.097
chr4:129437281	rs28398351	-	T>C	2902	41652	18.08	2.118e-05	0.9122
chr15:25043167	rs12898505	-	C>T	1054	12343	17.93	2.295e-05	1.152

ID	Name	Top Correlation
ICD-10: C099	Tonsil, unspecified	0/20
ICD-10: D370	Lip, oral cavity and pharynx	0/20
ICD-10: J151	Pneumonia due to Pseudomonas	0/20
ICD-10: J351	Hypertrophy of tonsils	0/20
ICD-10: J384	Oedema of larynx	0/20
ICD-10: K115	Sialolithiasis	0/20
ICD-10: M359	Systemic involvement of connective tissue, unspecified	0/20
ICD-10: M858	Other specified disorders of bone density and structure	0/20
ICD-10: M898	Other specified disorders of bone	0/20
ICD-10: N085	Glomerular disorders in systemic connective tissue disorders	0/20
ICD-10: T885	Other complications of anaesthesia	0/20

Abnormal palate morphology

0000174

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Links

Statistics

Phenotype Definition

Top SNP Information

Associated Diseases ^ⓘ

Abnormal palate morphology

0000174

Normal Case/Contol ⓘ

Sibling Case/Control ⓘ

Links

Statistics

Phenotype Definition

Top SNP Information Show Normal Table Show Sibling SNP

Associated Diseases ⓘ Shared SNP diseases No shared SNP diseases

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Top SNP Information

Associated Diseases ^ⓘ