Case | Control |
---|---|
47234 | 412960 |
An abnormality of the nose. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 20321 | 169942 | 34.95 | 3.381e-09 | 1.05 |
chr9:6192796 | rs2095044 | - | C>T | 27463 | 231488 | 33.94 | 5.694e-09 | 1.045 |
chr6:32338986 | rs2073044 | TSBP1 | C>T | 26348 | 221875 | 32.54 | 1.169e-08 | 1.044 |
chr9:6193455 | rs2381416 | - | A>C | 27833 | 234845 | 31.53 | 1.96e-08 | 1.043 |
chr6:32428062 | rs9268833 | - | C>T | 32297 | 273500 | 30.59 | 3.192e-08 | 1.04 |
chr6:32428115 | rs9268835 | - | G>A | 32286 | 273428 | 30.4 | 3.521e-08 | 1.04 |
chr6:396321 | rs12203592 | IRF4 | C>T | 21416 | 179789 | 29.72 | 4.983e-08 | 1.046 |
chr5:110532390 | rs10515425 | - | C>G | 6231 | 50534 | 29.34 | 6.076e-08 | 1.078 |
chr25:2685254 | rs311142 | - | C>T | 39343 | 334662 | 28.2 | 1.093e-07 | 1.037 |
chr6:32402778 | rs9268614 | - | T>G | 22969 | 193489 | 27.42 | 1.634e-07 | 1.042 |
chr6:32333341 | rs9268362 | TSBP1 | A>G | 22748 | 191663 | 27.3 | 1.742e-07 | 1.043 |
chr6:32303848 | rs28361060 | TSBP1 | G>A | 22695 | 191165 | 27.29 | 1.747e-07 | 1.043 |
chr6:32387809 | rs2395163 | - | T>C | 22573 | 190210 | 26.96 | 2.079e-07 | 1.042 |
chr9:6188740 | rs1412425 | - | C>A | 33936 | 288146 | 26.86 | 2.187e-07 | 1.037 |
chr11:96655314 | rs76682378 | - | C>T | 1732 | 13228 | 26.46 | 2.692e-07 | 1.142 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 22659 | 190969 | 26.33 | 2.877e-07 | 1.042 |
chr6:32582650 | rs3104413 | - | C>G | 19045 | 160024 | 26.28 | 2.951e-07 | 1.045 |
chr9:6190076 | rs1342326 | - | A>C | 17362 | 145533 | 26.26 | 2.978e-07 | 1.046 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 22654 | 190946 | 26.22 | 3.045e-07 | 1.042 |
chr23:50659210 | Affx-52372905 | BMP15 | C>CTCT | 1252 | 9686 | 25.57 | 4.255e-07 | 1.165 |
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 19584 | 163706 | 43.57 | 4.081e-11 | 1.058 |
chr6:32338986 | rs2073044 | TSBP1 | C>T | 25121 | 212123 | 35.36 | 2.735e-09 | 1.047 |
chr6:396321 | rs12203592 | IRF4 | C>T | 21134 | 177781 | 35.0 | 3.302e-09 | 1.05 |
chr6:32577380 | rs660895 | - | A>G | 20719 | 174248 | 34.87 | 3.517e-09 | 1.05 |
chr6:32581973 | rs521539 | - | G>A | 20715 | 174380 | 33.75 | 6.278e-09 | 1.049 |
chr5:110532390 | rs10515425 | - | C>G | 6145 | 49893 | 32.08 | 1.477e-08 | 1.082 |
chr6:32428062 | rs9268833 | - | C>T | 30752 | 261363 | 31.93 | 1.602e-08 | 1.042 |
chr6:32428115 | rs9268835 | - | G>A | 30744 | 261290 | 31.87 | 1.647e-08 | 1.042 |
chr6:32303848 | rs28361060 | TSBP1 | G>A | 22159 | 187078 | 31.16 | 2.382e-08 | 1.046 |
chr6:32333341 | rs9268362 | TSBP1 | A>G | 22210 | 187572 | 31.1 | 2.45e-08 | 1.046 |
chr6:32582650 | rs3104413 | - | C>G | 18405 | 154789 | 31.0 | 2.576e-08 | 1.05 |
chr6:32577973 | rs532965 | - | T>G | 18559 | 156108 | 30.62 | 3.135e-08 | 1.049 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 22123 | 186872 | 30.1 | 4.093e-08 | 1.046 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 22117 | 186863 | 29.94 | 4.463e-08 | 1.045 |
chr6:32583357 | rs6931277 | - | A>T | 18163 | 152793 | 29.75 | 4.911e-08 | 1.049 |
chr11:96655314 | rs76682378 | - | C>T | 1701 | 12942 | 29.53 | 5.512e-08 | 1.152 |
chr25:2685254 | rs311142 | - | C>T | 37550 | 320843 | 27.84 | 1.317e-07 | 1.038 |
chr6:32387809 | rs2395163 | - | T>C | 21531 | 182298 | 25.87 | 3.652e-07 | 1.043 |
chr6:32402778 | rs9268614 | - | T>G | 21877 | 185242 | 25.62 | 4.152e-07 | 1.042 |
chr20:40376088 | rs117411052 | - | G>T | 1897 | 14681 | 25.51 | 4.407e-07 | 1.132 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr9:6192796 | rs2095044 | - | C>T | 27463 | 66371 | 32.99 | 9.287e-09 | 1.049 |
chr9:6193455 | rs2381416 | - | A>C | 27833 | 67415 | 29.02 | 7.151e-08 | 1.046 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 7155 | 16664 | 28.1 | 1.15e-07 | 1.081 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 6095 | 14153 | 25.67 | 4.042e-07 | 1.083 |
chr9:6190076 | rs1342326 | - | A>C | 17362 | 41769 | 23.77 | 1.086e-06 | 1.05 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 4403 | 10121 | 23.36 | 1.341e-06 | 1.093 |
chr5:131784393 | rs12521868 | AC116366.3 | G>T | 40602 | 103939 | 22.55 | 2.043e-06 | 0.9646 |
chr9:6197377 | rs10975479 | - | A>G | 16863 | 40585 | 22.32 | 2.31e-06 | 1.049 |
chr5:131717050 | rs17622208 | SLC22A5 | G>A | 45678 | 116592 | 22.2 | 2.453e-06 | 0.9653 |
chr5:131770805 | rs2188962 | AC116366.3 | C>T | 40434 | 103275 | 21.92 | 2.84e-06 | 0.9649 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 4411 | 10169 | 21.89 | 2.887e-06 | 1.09 |
chr5:131672657 | rs56399423 | SLC22A4 | T>C | 41164 | 105232 | 21.82 | 2.988e-06 | 0.9652 |
chr5:131694077 | rs4705938 | - | T>C | 45556 | 116266 | 21.72 | 3.147e-06 | 0.9657 |
chr7:121937298 | rs11762051 | - | A>G | 17825 | 42999 | 21.32 | 3.884e-06 | 1.046 |
chr17:57506414 | rs1029731 | - | T>C | 14147 | 36955 | 21.23 | 4.067e-06 | 0.952 |
chr7:28180556 | rs864745 | JAZF1 | T>C | 49000 | 124823 | 21.01 | 4.58e-06 | 0.9664 |
chr7:28189411 | rs1635852 | JAZF1 | T>C | 49306 | 125588 | 20.74 | 5.267e-06 | 0.9666 |
chr5:131796922 | rs11745587 | AC116366.3 | G>A | 36208 | 88621 | 20.41 | 6.249e-06 | 1.036 |
chr13:73795820 | rs74459597 | - | G>A | 1793 | 3953 | 20.38 | 6.345e-06 | 1.138 |
chr5:131676320 | rs1050152 | SLC22A4 | C>T | 41128 | 105046 | 20.34 | 6.475e-06 | 0.9664 |
chr9:6192796 | rs2095044 | - | C>T | 24928 | 60727 | 25.95 | 3.501e-07 | 1.046 |
chr7:121937298 | rs11762051 | - | A>G | 16750 | 40485 | 24.19 | 8.717e-07 | 1.051 |
chr11:96655314 | rs76682378 | - | C>T | 1701 | 3714 | 24.09 | 9.183e-07 | 1.156 |
chr9:6193455 | rs2381416 | - | A>C | 25543 | 62352 | 23.29 | 1.395e-06 | 1.043 |
chr3:193266100 | rs78912308 | ATP13A4 | C>A | 8308 | 19725 | 22.05 | 2.657e-06 | 1.066 |
chr5:131796922 | rs11745587 | AC116366.3 | G>A | 33665 | 82728 | 21.7 | 3.19e-06 | 1.038 |
chr7:28180556 | rs864745 | JAZF1 | T>C | 47038 | 120541 | 21.32 | 3.881e-06 | 0.9651 |
chr7:28189411 | rs1635852 | JAZF1 | T>C | 47290 | 121175 | 20.98 | 4.653e-06 | 0.9654 |
chr3:193299226 | rs56002867 | ATP13A4 | C>T | 8287 | 19721 | 20.74 | 5.27e-06 | 1.064 |
chr7:28196222 | rs849134 | JAZF1 | A>G | 46289 | 118551 | 20.63 | 5.569e-06 | 0.9654 |
chr17:57506414 | rs1029731 | - | T>C | 13166 | 34615 | 20.46 | 6.078e-06 | 0.9512 |
chr5:131784393 | rs12521868 | AC116366.3 | G>T | 39609 | 101847 | 20.1 | 7.36e-06 | 0.9657 |
chr25:2685254 | rs311142 | - | C>T | 37550 | 92490 | 20.02 | 7.679e-06 | 1.036 |
chr5:110532390 | rs10515425 | - | C>G | 6145 | 14492 | 19.88 | 8.262e-06 | 1.073 |
chr9:6197377 | rs10975479 | - | A>G | 16079 | 38987 | 19.57 | 9.687e-06 | 1.047 |
chr3:193373936 | rs79129003 | OPA1 | G>A | 8246 | 19649 | 19.46 | 1.03e-05 | 1.062 |
chr5:131801158 | rs10077785 | AC116366.3 | C>T | 22716 | 55491 | 19.46 | 1.025e-05 | 1.041 |
chr5:131770805 | rs2188962 | AC116366.3 | C>T | 39441 | 101173 | 19.3 | 1.119e-05 | 0.9662 |
chr6:32650612 | rs9275134 | - | C>G | 22851 | 55827 | 19.15 | 1.211e-05 | 1.04 |
chr12:83337951 | rs33984139 | TMTC2 | A>G | 3278 | 9011 | 19.12 | 1.225e-05 | 0.9131 |