Case | Control |
---|---|
72520 | 387674 |
An abnormality of the skull, the bony framework of the head which is comprised of eight cranial and fourteen facial bones. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:396321 | rs12203592 | IRF4 | C>T | 33007 | 168198 | 82.62 | 9.924e-20 | 1.064 |
chr4:100239319 | rs1229984 | ADH1B | C>T | 4293 | 26183 | 65.02 | 7.418e-16 | 0.8741 |
chr3:181586376 | rs10937067 | - | G>A | 1810 | 11716 | 57.47 | 3.436e-14 | 0.825 |
chr11:44843134 | rs11038167 | TSPAN18 | A>C | 1367 | 9082 | 56.37 | 6.005e-14 | 0.8038 |
chr2:26113913 | rs78404020 | - | A>G | 1859 | 11958 | 55.39 | 9.864e-14 | 0.8299 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 40744 | 225654 | 54.23 | 1.784e-13 | 0.9548 |
chr7:114015707 | rs12705960 | FOXP2 | A>C | 76724 | 402432 | 53.74 | 2.287e-13 | 1.042 |
chr6:93667780 | rs9363020 | - | G>A | 1597 | 10394 | 53.72 | 2.316e-13 | 0.8206 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 3899 | 23627 | 52.95 | 3.423e-13 | 0.8804 |
chr1:29783282 | rs6676357 | - | T>C | 1322 | 8732 | 51.38 | 7.614e-13 | 0.8089 |
chr2:150445102 | rs4618014 | - | A>G | 2169 | 13670 | 51.0 | 9.223e-13 | 0.847 |
chr2:211717706 | rs12995612 | - | C>G | 2268 | 14204 | 49.08 | 2.458e-12 | 0.8526 |
chr13:74144529 | rs9573252 | - | C>G | 2956 | 18088 | 46.36 | 9.855e-12 | 0.8726 |
chr6:25842951 | rs1408272 | SLC17A3 | T>G | 12073 | 60606 | 45.35 | 1.647e-11 | 1.072 |
chr9:9860780 | rs2147065 | PTPRD | T>C | 2800 | 17167 | 45.32 | 1.669e-11 | 0.8707 |
chr1:169510139 | rs13306334 | F5 | G>A | 1565 | 10043 | 45.19 | 1.789e-11 | 0.8324 |
chr6:25918225 | rs80215559 | SLC17A2 | T>C | 11699 | 58685 | 44.64 | 2.372e-11 | 1.073 |
chr14:34703938 | rs7141321 | EGLN3 | T>C | 2030 | 12716 | 43.89 | 3.482e-11 | 0.8528 |
chr2:135837906 | rs7570971 | RAB3GAP1 | C>A | 46686 | 256887 | 43.53 | 4.18e-11 | 0.9609 |
chr16:75565284 | rs2738792 | AC009163.3 | G>A | 16205 | 91470 | 43.44 | 4.362e-11 | 0.9423 |
chr6:396321 | rs12203592 | IRF4 | C>T | 32581 | 166334 | 72.06 | 2.085e-17 | 1.06 |
chr7:114223723 | rs1229761 | FOXP2 | A>C | 47495 | 261621 | 54.35 | 1.676e-13 | 0.9561 |
chr7:114015707 | rs12705960 | FOXP2 | A>C | 71736 | 375396 | 53.64 | 2.402e-13 | 1.043 |
chr6:25918225 | rs80215559 | SLC17A2 | T>C | 11568 | 58127 | 40.07 | 2.449e-10 | 1.069 |
chr6:25842951 | rs1408272 | SLC17A3 | T>G | 11920 | 59964 | 40.05 | 2.482e-10 | 1.068 |
chr6:25488583 | rs2274089 | CARMIL1 | C>T | 14746 | 74825 | 37.29 | 1.018e-09 | 1.06 |
chr6:421281 | rs62389423 | - | G>A | 26310 | 135555 | 36.51 | 1.522e-09 | 1.046 |
chr7:114107594 | rs10225528 | FOXP2 | G>C | 37384 | 205716 | 36.5 | 1.526e-09 | 0.9613 |
chr7:114210814 | rs17137124 | FOXP2 | C>T | 62469 | 340682 | 36.04 | 1.928e-09 | 0.9659 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 33799 | 175181 | 34.81 | 3.643e-09 | 1.041 |
chr6:32303848 | rs28361060 | TSBP1 | G>A | 33837 | 175400 | 34.73 | 3.795e-09 | 1.041 |
chr6:32338986 | rs2073044 | TSBP1 | C>T | 38308 | 198936 | 34.69 | 3.867e-09 | 1.039 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 33790 | 175205 | 34.4 | 4.486e-09 | 1.041 |
chr6:16948451 | rs17770697 | - | G>A | 33767 | 186107 | 34.34 | 4.631e-09 | 0.9612 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 34185 | 188275 | 34.05 | 5.364e-09 | 0.9615 |
chr6:32333341 | rs9268362 | TSBP1 | A>G | 33918 | 175864 | 33.91 | 5.783e-09 | 1.04 |
chr3:71536301 | rs62247171 | FOXP1 | C>T | 42833 | 234007 | 33.08 | 8.826e-09 | 0.9641 |
chr6:32582650 | rs3104413 | - | C>G | 28066 | 145128 | 33.01 | 9.183e-09 | 1.043 |
chr6:32577973 | rs532965 | - | T>G | 28308 | 146359 | 32.7 | 1.076e-08 | 1.042 |
chr6:32583357 | rs6931277 | - | A>T | 27704 | 143252 | 32.49 | 1.196e-08 | 1.043 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr7:114015707 | rs12705960 | FOXP2 | A>C | 71736 | 192631 | 37.47 | 9.284e-10 | 1.038 |
chr7:114223723 | rs1229761 | FOXP2 | A>C | 47495 | 133475 | 36.76 | 1.335e-09 | 0.9612 |
chr6:396321 | rs12203592 | IRF4 | C>T | 32581 | 86258 | 32.08 | 1.482e-08 | 1.043 |
chr6:32376348 | rs3763312 | - | G>A | 32815 | 87093 | 29.4 | 5.897e-08 | 1.041 |
chr6:32371915 | rs3793127 | BTNL2 | C>T | 33033 | 87720 | 28.25 | 1.065e-07 | 1.04 |
chr6:32375973 | rs3763309 | - | C>A | 32981 | 87583 | 28.22 | 1.084e-07 | 1.04 |
chr6:32387809 | rs2395163 | - | T>C | 32896 | 87362 | 27.99 | 1.218e-07 | 1.04 |
chr6:32338986 | rs2073044 | TSBP1 | C>T | 38308 | 101987 | 27.42 | 1.64e-07 | 1.037 |
chr6:32402778 | rs9268614 | - | T>G | 33417 | 88812 | 26.97 | 2.069e-07 | 1.039 |
chr6:25488583 | rs2274089 | CARMIL1 | C>T | 14746 | 38497 | 26.57 | 2.54e-07 | 1.054 |
chr6:72678893 | rs9342907 | RIMS1 | A>G | 5403 | 13633 | 26.43 | 2.735e-07 | 1.088 |
chr6:32583357 | rs6931277 | - | A>T | 27704 | 73483 | 25.32 | 4.854e-07 | 1.04 |
chr6:32582650 | rs3104413 | - | C>G | 28066 | 74447 | 24.98 | 5.803e-07 | 1.04 |
chr6:32577973 | rs532965 | - | T>G | 28308 | 75077 | 24.95 | 5.886e-07 | 1.04 |
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 29677 | 78768 | 24.94 | 5.905e-07 | 1.039 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 33790 | 89995 | 23.85 | 1.043e-06 | 1.036 |
chr6:26148326 | rs806973 | - | A>G | 55286 | 154215 | 23.77 | 1.083e-06 | 0.9697 |
chr21:18425348 | rs8132107 | - | A>G | 72462 | 195364 | 23.57 | 1.203e-06 | 1.03 |
chr6:25842951 | rs1408272 | SLC17A3 | T>G | 11920 | 31036 | 23.48 | 1.263e-06 | 1.056 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 33799 | 90011 | 23.46 | 1.274e-06 | 1.036 |