Case | Control |
---|---|
92634 | 367560 |
An abnormality affecting one or both hands. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 4224 | 23302 | 374.4 | 2.081e-83 | 0.7218 |
chr15:48392165 | rs1834640 | - | A>G | 5049 | 26575 | 323.4 | 2.665e-72 | 0.7565 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 11615 | 55443 | 309.2 | 3.273e-69 | 0.8311 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 9844 | 47148 | 269.3 | 1.648e-60 | 0.8298 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 2591 | 14149 | 212.3 | 4.365e-48 | 0.7317 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 3559 | 18384 | 194.7 | 3.025e-44 | 0.7731 |
chr19:42392441 | rs16975619 | ARHGEF1 | T>C | 3222 | 16788 | 188.2 | 7.69e-43 | 0.7669 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 3108 | 16269 | 188.1 | 8.184e-43 | 0.7634 |
chr19:42391425 | rs28521795 | ARHGEF1 | G>A | 3022 | 15800 | 181.3 | 2.55e-41 | 0.7643 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 2901 | 15244 | 180.8 | 3.165e-41 | 0.7605 |
chr14:33956209 | rs1012023 | NPAS3 | C>A | 5632 | 27428 | 180.7 | 3.394e-41 | 0.8192 |
chr19:42392310 | rs2288509 | ARHGEF1 | C>T | 2800 | 14744 | 177.6 | 1.588e-40 | 0.7588 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 16445 | 73663 | 176.4 | 2.896e-40 | 0.8871 |
chr2:235130071 | rs10177096 | - | A>G | 3473 | 17777 | 175.7 | 4.178e-40 | 0.7806 |
chr2:226686177 | rs7581591 | - | T>C | 3218 | 16617 | 174.5 | 7.671e-40 | 0.7742 |
chr6:3185712 | rs7754077 | - | C>T | 3011 | 15661 | 173.1 | 1.567e-39 | 0.7686 |
chr5:54280007 | rs1508890 | ESM1 | C>A | 2967 | 15449 | 172.7 | 1.911e-39 | 0.7674 |
chr5:147671850 | rs7724380 | - | G>A | 3288 | 16895 | 171.9 | 2.899e-39 | 0.7776 |
chr6:170242949 | rs9396958 | - | T>C | 2555 | 13559 | 171.0 | 4.496e-39 | 0.7535 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 7138 | 33842 | 170.5 | 5.822e-39 | 0.841 |
chr22:46381234 | rs62228062 | - | A>G | 49101 | 187678 | 74.39 | 6.418e-18 | 1.052 |
chr22:46362396 | rs9330811 | WNT7B | G>A | 78257 | 317805 | 60.47 | 7.466e-15 | 0.9599 |
chr22:46381414 | rs62228064 | - | G>A | 27833 | 106209 | 39.3 | 3.625e-10 | 1.047 |
chr3:35667761 | rs10490871 | - | A>G | 68541 | 266653 | 33.05 | 9.001e-09 | 1.031 |
chr7:2078981 | rs56226325 | MAD1L1 | C>T | 27947 | 114742 | 31.19 | 2.341e-08 | 0.9604 |
chr7:2028968 | rs34809719 | MAD1L1 | G>T | 33472 | 136891 | 29.9 | 4.54e-08 | 0.9638 |
chr14:69704553 | rs8007859 | EXD2 | T>G | 70273 | 283934 | 29.33 | 6.107e-08 | 0.9714 |
chr11:88378610 | rs61902889 | GRM5 | C>T | 33482 | 136856 | 28.86 | 7.767e-08 | 0.9644 |
chr16:30918487 | rs11649653 | - | C>G | 69314 | 279951 | 28.65 | 8.655e-08 | 0.9716 |
chr18:77563334 | rs11665567 | - | G>A | 39568 | 152938 | 27.86 | 1.308e-07 | 1.034 |
chr3:43066308 | rs6806706 | AC092042.3 | A>C | 73668 | 297222 | 27.55 | 1.531e-07 | 0.9725 |
chr7:1935598 | rs7791299 | MAD1L1 | T>C | 30587 | 125068 | 27.3 | 1.745e-07 | 0.9641 |
chr14:69701863 | rs4243633 | EXD2 | A>C | 69892 | 281886 | 26.52 | 2.613e-07 | 0.9727 |
chr7:1921362 | rs10278591 | MAD1L1 | C>T | 32855 | 134152 | 26.49 | 2.654e-07 | 0.9656 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 43938 | 178522 | 26.25 | 2.999e-07 | 0.9692 |
chr10:105041253 | rs72846169 | INA | T>G | 9942 | 41698 | 26.21 | 3.065e-07 | 0.9429 |
chr2:136594158 | rs2236783 | LCT | A>G | 38189 | 155479 | 25.57 | 4.273e-07 | 0.9681 |
chr6:32148031 | rs1062070 | RNF5 | A>G | 37238 | 143945 | 25.46 | 4.528e-07 | 1.033 |
chr6:32205942 | rs6901158 | - | C>T | 30774 | 118600 | 25.03 | 5.631e-07 | 1.036 |
chr6:32147696 | rs3130349 | RNF5 | G>A | 37581 | 145326 | 24.95 | 5.895e-07 | 1.033 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr4:155507590 | rs6050 | FGA | T>C | 46118 | 7151 | 24.09 | 9.182e-07 | 0.93 |
chr8:29351566 | rs11992708 | - | C>G | 27727 | 3766 | 23.77 | 1.085e-06 | 1.096 |
chr4:155525276 | rs2066865 | - | G>A | 44196 | 6848 | 22.55 | 2.051e-06 | 0.9313 |
chr3:164559824 | rs78012022 | - | G>A | 11864 | 1542 | 21.81 | 3.012e-06 | 1.139 |
chr10:30288371 | rs117758138 | - | A>G | 2163 | 407 | 21.44 | 3.656e-06 | 0.7777 |
chr8:4607411 | rs17418877 | CSMD1 | C>T | 2026 | 384 | 21.41 | 3.705e-06 | 0.7721 |
chr6:88225451 | rs17582443 | RARS2 | A>G | 2617 | 482 | 21.3 | 3.933e-06 | 0.7943 |
chr4:155514879 | rs13109457 | - | G>A | 46733 | 7216 | 21.22 | 4.088e-06 | 0.9344 |
chr19:10742170 | rs2288904 | SLC44A2 | G>A | 41216 | 5725 | 21.02 | 4.535e-06 | 1.076 |
chr19:7994233 | rs3810213 | TIMM44 | G>A | 23293 | 3690 | 20.84 | 4.991e-06 | 0.9167 |
chr4:155451759 | rs12511469 | - | T>A | 36011 | 5607 | 20.71 | 5.342e-06 | 0.9294 |
chr9:136154867 | rs495828 | - | G>T | 38420 | 5963 | 20.56 | 5.785e-06 | 0.9311 |
chr4:155483914 | rs1800788 | - | C>T | 36248 | 5644 | 20.4 | 6.277e-06 | 0.93 |
chr23:37860450 | rs2093031 | AF241726.2 | T>C | 56089 | 8287 | 20.22 | 6.896e-06 | 0.9337 |
chr3:45159034 | rs62242540 | CDCP1 | C>T | 90072 | 12844 | 20.17 | 7.087e-06 | 1.06 |
chr9:136153875 | rs651007 | - | C>T | 38476 | 5970 | 19.38 | 1.07e-05 | 0.9331 |
chr9:136149399 | rs507666 | ABO | G>A | 33994 | 5294 | 19.35 | 1.09e-05 | 0.9302 |
chr14:99594979 | rs34264757 | - | G>A | 23895 | 3249 | 19.31 | 1.114e-05 | 1.092 |
chr19:10728320 | rs2043305 | SLC44A2 | G>A | 40876 | 5683 | 19.3 | 1.114e-05 | 1.073 |
chr19:10728030 | rs8106664 | SLC44A2 | T>G | 40889 | 5686 | 19.3 | 1.116e-05 | 1.072 |