Case | Control |
---|---|
134590 | 325604 |
An abnormal structure or form of the joints, i.e., one or more of the articulations where two bones join. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 7094 | 20432 | 154.9 | 1.453e-35 | 0.8406 |
chr15:48392165 | rs1834640 | - | A>G | 8334 | 23290 | 122.4 | 1.923e-28 | 0.8665 |
chr2:211717706 | rs12995612 | - | C>G | 4162 | 12310 | 121.4 | 3.114e-28 | 0.8197 |
chr6:170242949 | rs9396958 | - | T>C | 4078 | 12036 | 116.2 | 4.226e-27 | 0.8216 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 18329 | 48729 | 113.2 | 1.995e-26 | 0.9091 |
chr2:26113913 | rs78404020 | - | A>G | 3467 | 10350 | 111.1 | 5.753e-26 | 0.8124 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 15520 | 41472 | 105.9 | 7.631e-25 | 0.9052 |
chr4:134694407 | rs6845289 | - | G>A | 3009 | 9011 | 99.11 | 2.393e-23 | 0.8102 |
chr3:181586376 | rs10937067 | - | G>A | 3419 | 10107 | 98.82 | 2.759e-23 | 0.8207 |
chr15:93585096 | rs74245341 | RGMA | C>A | 5657 | 16006 | 98.23 | 3.734e-23 | 0.8566 |
chr11:44843134 | rs11038167 | TSPAN18 | A>C | 2588 | 7861 | 97.65 | 5.003e-23 | 0.7989 |
chr6:170602429 | rs17860704 | DLL1 | T>C | 2932 | 8786 | 97.01 | 6.886e-23 | 0.8099 |
chr1:29783282 | rs6676357 | - | T>C | 2485 | 7569 | 95.96 | 1.174e-22 | 0.7969 |
chr20:19214390 | rs6136658 | SLC24A3 | G>A | 3469 | 10206 | 95.27 | 1.657e-22 | 0.8247 |
chr2:108088349 | rs2377892 | - | G>A | 3559 | 10435 | 94.14 | 2.946e-22 | 0.8275 |
chr1:236085940 | rs12038310 | - | C>T | 3918 | 11358 | 91.41 | 1.167e-21 | 0.8368 |
chr6:26285683 | rs2393593 | H4C8 | C>T | 130936 | 311249 | 90.34 | 2.005e-21 | 1.043 |
chr7:89690199 | rs1990160 | - | T>C | 7992 | 21967 | 90.07 | 2.302e-21 | 0.8818 |
chr6:26187783 | rs1543681 | - | C>A | 134659 | 334743 | 88.5 | 5.089e-21 | 0.9589 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 3705 | 10758 | 87.77 | 7.368e-21 | 0.8357 |
chr6:26285683 | rs2393593 | H4C8 | C>T | 127609 | 302951 | 60.74 | 6.51e-15 | 1.036 |
chr6:26276650 | rs9393692 | - | G>A | 128188 | 304346 | 59.88 | 1.008e-14 | 1.036 |
chr3:50070763 | rs7621352 | RBM6 | A>C | 124134 | 305915 | 56.77 | 4.904e-14 | 0.9659 |
chr6:26303319 | rs9357004 | - | T>C | 129253 | 318229 | 54.59 | 1.488e-13 | 0.9667 |
chr3:49902544 | rs9821675 | CAMKV | A>G | 136985 | 325865 | 54.25 | 1.769e-13 | 1.034 |
chr6:26187783 | rs1543681 | - | C>A | 123235 | 303535 | 53.95 | 2.052e-13 | 0.9668 |
chr3:49936102 | rs2230590 | MST1R | C>T | 128352 | 315923 | 53.84 | 2.174e-13 | 0.9668 |
chr6:26189615 | rs806977 | - | A>G | 123633 | 304467 | 53.34 | 2.806e-13 | 0.967 |
chr6:26198046 | rs4145878 | AL031777.2 | T>A | 123185 | 303534 | 53.27 | 2.911e-13 | 0.9669 |
chr3:50129399 | Affx-22412948 | RBM6 | C>T | 126706 | 311916 | 53.2 | 3.012e-13 | 0.9671 |
chr6:26293338 | rs7746807 | - | A>C | 131703 | 313198 | 53.13 | 3.126e-13 | 1.034 |
chr3:49924940 | rs1062633 | MST1R | C>T | 127752 | 314507 | 53.01 | 3.313e-13 | 0.967 |
chr3:50174848 | rs7642934 | - | G>A | 126057 | 310364 | 51.35 | 7.717e-13 | 0.9676 |
chr6:26271713 | rs9393690 | H3C8 | T>A | 132217 | 314544 | 51.25 | 8.144e-13 | 1.033 |
chr6:26285560 | rs2393592 | H4C8 | G>A | 132006 | 313975 | 51.18 | 8.408e-13 | 1.033 |
chr6:26287043 | rs1124999 | - | T>G | 131855 | 313671 | 50.86 | 9.913e-13 | 1.033 |
chr3:49941436 | rs2280406 | - | G>A | 137643 | 327733 | 50.55 | 1.163e-12 | 1.033 |
chr6:26289435 | rs9379843 | - | G>A | 132102 | 314300 | 50.53 | 1.174e-12 | 1.033 |
chr6:26287256 | rs1125000 | - | T>C | 133032 | 316600 | 50.46 | 1.216e-12 | 1.033 |
chr6:26290377 | rs4412192 | - | A>G | 134476 | 320068 | 49.94 | 1.588e-12 | 1.033 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:26276650 | rs9393692 | - | G>A | 128188 | 105517 | 41.91 | 9.539e-11 | 1.038 |
chr6:26285683 | rs2393593 | H4C8 | C>T | 127609 | 105050 | 41.44 | 1.213e-10 | 1.038 |
chr6:26293338 | rs7746807 | - | A>C | 131703 | 108565 | 38.68 | 5e-10 | 1.036 |
chr6:26303319 | rs9357004 | - | T>C | 129253 | 110476 | 36.86 | 1.268e-09 | 0.9659 |
chr6:26285560 | rs2393592 | H4C8 | G>A | 132006 | 108844 | 36.77 | 1.326e-09 | 1.035 |
chr6:26271713 | rs9393690 | H3C8 | T>A | 132217 | 109032 | 36.65 | 1.415e-09 | 1.035 |
chr6:26287256 | rs1125000 | - | T>C | 133032 | 109745 | 36.46 | 1.556e-09 | 1.035 |
chr6:26187783 | rs1543681 | - | C>A | 123235 | 105356 | 36.43 | 1.58e-09 | 0.966 |
chr6:26198046 | rs4145878 | AL031777.2 | T>A | 123185 | 105338 | 35.95 | 2.02e-09 | 0.9662 |
chr6:26189615 | rs806977 | - | A>G | 123633 | 105675 | 35.87 | 2.106e-09 | 0.9663 |
chr6:26290377 | rs4412192 | - | A>G | 134476 | 110972 | 35.78 | 2.209e-09 | 1.035 |
chr6:26289435 | rs9379843 | - | G>A | 132102 | 108964 | 35.72 | 2.278e-09 | 1.035 |
chr6:26287043 | rs1124999 | - | T>G | 131855 | 108768 | 35.24 | 2.917e-09 | 1.035 |
chr4:1734239 | rs798766 | TACC3 | C>T | 50272 | 43660 | 33.24 | 8.148e-09 | 0.9589 |
chr2:70703847 | rs958685 | TGFA | A>C | 131870 | 108824 | 32.37 | 1.275e-08 | 1.033 |
chr4:1689377 | rs811316 | - | C>T | 49724 | 43172 | 32.17 | 1.416e-08 | 0.9594 |
chr4:1745500 | rs4865467 | TACC3 | G>T | 50227 | 43547 | 30.19 | 3.927e-08 | 0.9608 |
chr6:26200677 | rs806794 | - | A>G | 72175 | 62113 | 28.38 | 9.979e-08 | 0.9664 |
chr3:69761909 | rs59780376 | - | A>G | 4630 | 4320 | 25.35 | 4.782e-07 | 0.8981 |
chr3:49902544 | rs9821675 | CAMKV | A>G | 136985 | 113357 | 24.45 | 7.618e-07 | 1.029 |