Case | Control |
---|---|
66535 | 393659 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:32605884 | rs2187668 | HLA-DQA1 | C>T | 21640 | 116031 | 199.3 | 3.019e-45 | 1.12 |
chr6:32657436 | rs3129716 | - | T>C | 21931 | 117704 | 197.9 | 5.98e-45 | 1.119 |
chr6:32659645 | rs2856674 | - | A>G | 22016 | 118382 | 192.2 | 1.07e-43 | 1.117 |
chr6:32666526 | rs1794282 | - | C>T | 18637 | 99783 | 173.0 | 1.659e-39 | 1.119 |
chr6:32345689 | rs2894254 | - | T>G | 18825 | 100936 | 169.4 | 1.018e-38 | 1.117 |
chr6:32408497 | rs3135394 | HLA-DRA | A>G | 18822 | 100990 | 167.6 | 2.446e-38 | 1.117 |
chr6:32303692 | rs1265754 | TSBP1 | T>A | 18907 | 101473 | 167.2 | 3.061e-38 | 1.116 |
chr6:32310863 | rs2849018 | TSBP1 | T>C | 18908 | 101535 | 165.2 | 8.109e-38 | 1.115 |
chr6:32333827 | rs3129927 | TSBP1 | A>C | 18894 | 101441 | 165.1 | 8.594e-38 | 1.115 |
chr6:32261252 | rs7775397 | TSBP1 | T>G | 18886 | 101411 | 165.1 | 8.815e-38 | 1.115 |
chr6:32628698 | rs9273529 | HLA-DQB1 | C>T | 37257 | 206800 | 164.7 | 1.046e-37 | 1.088 |
chr6:32302382 | rs1265757 | TSBP1 | C>T | 18848 | 101223 | 164.0 | 1.498e-37 | 1.115 |
chr6:32631348 | rs9274253 | HLA-DQB1 | G>A | 37158 | 206173 | 163.5 | 1.909e-37 | 1.087 |
chr6:32325562 | rs2395149 | TSBP1 | G>A | 18866 | 101364 | 163.3 | 2.186e-37 | 1.115 |
chr6:32395726 | rs3129843 | - | A>G | 18749 | 100748 | 163.1 | 2.338e-37 | 1.115 |
chr6:32194630 | rs3096690 | - | G>C | 19253 | 103637 | 159.4 | 1.503e-36 | 1.112 |
chr6:32634467 | rs3891175 | HLA-DQB1 | C>T | 37003 | 205578 | 158.9 | 1.939e-36 | 1.086 |
chr6:32603007 | rs2040406 | HLA-DQA1 | A>G | 26311 | 143838 | 157.6 | 3.815e-36 | 1.098 |
chr6:32623150 | rs3021302 | - | T>C | 24874 | 135954 | 151.6 | 7.718e-35 | 1.098 |
chr6:32290208 | rs9268235 | TSBP1 | C>T | 19022 | 102664 | 151.4 | 8.531e-35 | 1.11 |
chr6:32605884 | rs2187668 | HLA-DQA1 | C>T | 20741 | 111376 | 193.6 | 5.122e-44 | 1.121 |
chr6:32657436 | rs3129716 | - | T>C | 21057 | 113168 | 191.7 | 1.349e-43 | 1.12 |
chr6:32659645 | rs2856674 | - | A>G | 21132 | 113726 | 187.9 | 9.084e-43 | 1.118 |
chr6:32666526 | rs1794282 | - | C>T | 18448 | 98829 | 176.2 | 3.308e-40 | 1.121 |
chr6:32345689 | rs2894254 | - | T>G | 18631 | 99943 | 173.1 | 1.581e-39 | 1.12 |
chr6:32303692 | rs1265754 | TSBP1 | T>A | 18713 | 100484 | 170.7 | 5.211e-39 | 1.119 |
chr6:32408497 | rs3135394 | HLA-DRA | A>G | 18624 | 100010 | 169.8 | 8.017e-39 | 1.118 |
chr6:32333827 | rs3129927 | TSBP1 | A>C | 18698 | 100451 | 168.1 | 1.916e-38 | 1.118 |
chr6:32261252 | rs7775397 | TSBP1 | T>G | 18692 | 100430 | 167.9 | 2.077e-38 | 1.118 |
chr6:32310863 | rs2849018 | TSBP1 | T>C | 18699 | 100491 | 167.5 | 2.588e-38 | 1.117 |
chr6:32302382 | rs1265757 | TSBP1 | C>T | 18656 | 100245 | 167.1 | 3.199e-38 | 1.117 |
chr6:32325562 | rs2395149 | TSBP1 | G>A | 18672 | 100380 | 166.4 | 4.591e-38 | 1.117 |
chr6:32395726 | rs3129843 | - | A>G | 18554 | 99766 | 166.0 | 5.574e-38 | 1.117 |
chr6:32194630 | rs3096690 | - | G>C | 19027 | 102450 | 163.3 | 2.11e-37 | 1.115 |
chr6:32628698 | rs9273529 | HLA-DQB1 | C>T | 35449 | 197130 | 156.3 | 7.348e-36 | 1.088 |
chr6:32290208 | rs9268235 | TSBP1 | C>T | 18826 | 101667 | 154.9 | 1.483e-35 | 1.112 |
chr6:32603007 | rs2040406 | HLA-DQA1 | A>G | 24956 | 136496 | 154.4 | 1.849e-35 | 1.1 |
chr6:32623150 | rs3021302 | - | T>C | 23611 | 128907 | 154.4 | 1.938e-35 | 1.102 |
chr6:32631348 | rs9274253 | HLA-DQB1 | G>A | 35326 | 196440 | 153.8 | 2.553e-35 | 1.087 |
chr6:32179438 | rs3132956 | NOTCH4 | G>A | 21545 | 117117 | 153.2 | 3.51e-35 | 1.105 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:32605884 | rs2187668 | HLA-DQA1 | C>T | 20741 | 84716 | 193.6 | 5.316e-44 | 1.124 |
chr6:32657436 | rs3129716 | - | T>C | 21057 | 86123 | 189.6 | 3.832e-43 | 1.122 |
chr6:32659645 | rs2856674 | - | A>G | 21132 | 86559 | 185.4 | 3.162e-42 | 1.12 |
chr6:32666526 | rs1794282 | - | C>T | 18448 | 75198 | 174.7 | 7.019e-40 | 1.124 |
chr6:32345689 | rs2894254 | - | T>G | 18631 | 76089 | 169.4 | 9.925e-39 | 1.121 |
chr6:32408497 | rs3135394 | HLA-DRA | A>G | 18624 | 76108 | 168.0 | 2.02e-38 | 1.121 |
chr6:32303692 | rs1265754 | TSBP1 | T>A | 18713 | 76507 | 167.1 | 3.151e-38 | 1.12 |
chr6:32395726 | rs3129843 | - | A>G | 18554 | 75917 | 164.5 | 1.166e-37 | 1.12 |
chr6:32333827 | rs3129927 | TSBP1 | A>C | 18698 | 76486 | 164.4 | 1.239e-37 | 1.119 |
chr6:32261252 | rs7775397 | TSBP1 | T>G | 18692 | 76473 | 164.2 | 1.369e-37 | 1.119 |
chr6:32310863 | rs2849018 | TSBP1 | T>C | 18699 | 76518 | 163.6 | 1.845e-37 | 1.119 |
chr6:32302382 | rs1265757 | TSBP1 | C>T | 18656 | 76335 | 163.2 | 2.308e-37 | 1.119 |
chr6:32325562 | rs2395149 | TSBP1 | G>A | 18672 | 76434 | 162.6 | 2.995e-37 | 1.119 |
chr6:32194630 | rs3096690 | - | G>C | 19027 | 77975 | 161.2 | 6.102e-37 | 1.117 |
chr6:32603007 | rs2040406 | HLA-DQA1 | A>G | 24956 | 103792 | 157.1 | 4.878e-36 | 1.103 |
chr6:32623150 | rs3021302 | - | T>C | 23611 | 98019 | 156.8 | 5.647e-36 | 1.105 |
chr6:32628698 | rs9273529 | HLA-DQB1 | C>T | 35449 | 150069 | 156.1 | 7.971e-36 | 1.09 |
chr6:32631348 | rs9274253 | HLA-DQB1 | G>A | 35326 | 149555 | 153.7 | 2.713e-35 | 1.089 |
chr6:32179438 | rs3132956 | NOTCH4 | G>A | 21545 | 89147 | 151.7 | 7.413e-35 | 1.107 |
chr6:32634467 | rs3891175 | HLA-DQB1 | C>T | 35266 | 149398 | 151.4 | 8.365e-35 | 1.089 |
ID | Name | Top Correlation |
---|---|---|
ICD: K900 | Coeliac disease | 15/20 |
ICD: R634 | Abnormal weight loss | 7/20 |