Case | Control |
---|---|
55537 | 404657 |
An abnormality of the hair. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 2368 | 25158 | 298.3 | 7.814e-67 | 0.6886 |
chr6:396321 | rs12203592 | IRF4 | C>T | 26204 | 175001 | 292.5 | 1.384e-65 | 1.137 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 6647 | 60411 | 278.5 | 1.568e-62 | 0.801 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 5672 | 51320 | 224.8 | 8.056e-51 | 0.8067 |
chr15:48392165 | rs1834640 | - | A>G | 2946 | 28678 | 212.8 | 3.43e-48 | 0.752 |
chr6:421281 | rs62389423 | - | G>A | 21287 | 142749 | 206.4 | 8.557e-47 | 1.124 |
chr20:2315543 | rs6132532 | AL121899.2 | A>G | 5022 | 44512 | 159.5 | 1.432e-36 | 0.8253 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 2020 | 19923 | 158.3 | 2.628e-36 | 0.7442 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 1476 | 15264 | 157.0 | 4.997e-36 | 0.7102 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 1753 | 17624 | 156.2 | 7.663e-36 | 0.7304 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 9596 | 80512 | 154.4 | 1.911e-35 | 0.8693 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 1641 | 16504 | 147.0 | 7.954e-34 | 0.7299 |
chr19:42392441 | rs16975619 | ARHGEF1 | T>C | 1837 | 18173 | 146.9 | 8.341e-34 | 0.7422 |
chr6:3185712 | rs7754077 | - | C>T | 1699 | 16973 | 145.2 | 1.949e-33 | 0.7351 |
chr5:147671850 | rs7724380 | - | G>A | 1860 | 18323 | 144.6 | 2.573e-33 | 0.7452 |
chr7:38331504 | rs1860521 | - | C>T | 1621 | 16300 | 144.6 | 2.628e-33 | 0.7304 |
chr1:65858151 | rs11208644 | DNAJC6 | C>T | 2540 | 23950 | 142.1 | 9.168e-33 | 0.7781 |
chr1:65860660 | rs12077111 | DNAJC6 | T>C | 2556 | 24075 | 141.8 | 1.057e-32 | 0.7788 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 4142 | 37005 | 141.7 | 1.103e-32 | 0.82 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 4125 | 36855 | 141.6 | 1.212e-32 | 0.8198 |
chr6:396321 | rs12203592 | IRF4 | C>T | 25926 | 172989 | 225.9 | 4.591e-51 | 1.121 |
chr6:421281 | rs62389423 | - | G>A | 21025 | 140840 | 157.1 | 4.855e-36 | 1.108 |
chr11:89017961 | rs1126809 | TYR | G>A | 33373 | 233964 | 60.13 | 8.874e-15 | 1.056 |
chr2:202143928 | rs10931936 | CASP8 | C>T | 30778 | 215861 | 53.34 | 2.803e-13 | 1.054 |
chr11:89005253 | rs1847134 | TYR | A>C | 38307 | 270351 | 51.6 | 6.811e-13 | 1.05 |
chr11:89011046 | rs1393350 | TYR | G>A | 33085 | 232647 | 51.49 | 7.202e-13 | 1.052 |
chr16:89818732 | rs12931267 | FANCA | C>G | 11891 | 81204 | 48.72 | 2.945e-12 | 1.075 |
chr6:475489 | rs12210050 | - | C>T | 23322 | 162674 | 48.31 | 3.641e-12 | 1.056 |
chr16:89986117 | Affx-35293625 | MC1R | C>T | 12018 | 82173 | 47.65 | 5.102e-12 | 1.074 |
chr2:202122995 | rs3769823 | CASP8 | G>A | 32333 | 227849 | 44.17 | 3.008e-11 | 1.048 |
chr6:384970 | rs7773997 | - | C>T | 37677 | 282771 | 43.95 | 3.371e-11 | 0.9562 |
chr16:90067184 | rs73283869 | - | G>A | 11179 | 76547 | 41.86 | 9.792e-11 | 1.071 |
chr11:89037936 | rs1806319 | - | T>C | 43027 | 305585 | 41.19 | 1.382e-10 | 1.043 |
chr16:90067136 | rs78800020 | - | G>C | 11234 | 76959 | 41.16 | 1.405e-10 | 1.071 |
chr16:90048395 | rs45610233 | - | C>T | 10667 | 72989 | 40.62 | 1.853e-10 | 1.072 |
chr6:453415 | rs9392026 | - | A>G | 45559 | 323613 | 40.22 | 2.264e-10 | 1.042 |
chr2:202215492 | rs13014235 | FLACC1 | G>C | 44463 | 315973 | 39.8 | 2.819e-10 | 1.042 |
chr6:411064 | rs872071 | IRF4 | G>A | 51365 | 382045 | 37.39 | 9.685e-10 | 0.9615 |
chr16:90093075 | rs77270200 | GAS8 | G>A | 11967 | 82483 | 36.03 | 1.944e-09 | 1.064 |
chr6:501939 | rs6919639 | EXOC2 | C>T | 30340 | 227933 | 35.99 | 1.986e-09 | 0.9578 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 2368 | 9970 | 284.9 | 6.49e-64 | 0.6785 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 6647 | 23778 | 259.2 | 2.601e-58 | 0.7946 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 5672 | 20184 | 207.8 | 4.183e-47 | 0.8009 |
chr15:48392165 | rs1834640 | - | A>G | 2946 | 11345 | 203.5 | 3.688e-46 | 0.7423 |
chr6:396321 | rs12203592 | IRF4 | C>T | 26204 | 69122 | 194.2 | 3.828e-44 | 1.122 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 1753 | 7251 | 189.2 | 4.869e-43 | 0.6928 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 2020 | 8127 | 185.0 | 3.925e-42 | 0.7119 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 1641 | 6802 | 179.7 | 5.687e-41 | 0.6911 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 1476 | 6213 | 175.5 | 4.575e-40 | 0.6811 |
chr9:137925543 | rs7027926 | - | G>A | 1523 | 6325 | 167.8 | 2.273e-38 | 0.6905 |
chr1:173579034 | rs12065033 | AL139142.2 | C>T | 1367 | 5788 | 167.5 | 2.58e-38 | 0.6775 |
chr19:42392441 | rs16975619 | ARHGEF1 | T>C | 1837 | 7376 | 165.9 | 5.942e-38 | 0.7138 |
chr8:10557760 | rs57041981 | RP1L1 | A>G | 1502 | 6224 | 163.4 | 2.091e-37 | 0.6921 |
chr20:2315543 | rs6132532 | AL121899.2 | A>G | 5022 | 17666 | 163.1 | 2.429e-37 | 0.8117 |
chr7:38331504 | rs1860521 | - | C>T | 1621 | 6612 | 161.1 | 6.643e-37 | 0.7028 |
chr23:71628912 | rs3012642 | AL133500.1 | A>G | 2169 | 8583 | 160.5 | 8.848e-37 | 0.7354 |
chr19:42391425 | rs28521795 | ARHGEF1 | G>A | 1733 | 6983 | 159.6 | 1.401e-36 | 0.7116 |
chr9:129979758 | rs3780318 | RALGPS1 | G>A | 1486 | 6143 | 159.5 | 1.469e-36 | 0.6937 |
chr6:3185712 | rs7754077 | - | C>T | 1699 | 6864 | 159.4 | 1.56e-36 | 0.7095 |
chr5:147671850 | rs7724380 | - | G>A | 1860 | 7367 | 154.0 | 2.3e-35 | 0.7236 |
chr6:396321 | rs12203592 | IRF4 | C>T | 25926 | 68281 | 140.8 | 1.775e-32 | 1.104 |
chr6:421281 | rs62389423 | - | G>A | 21025 | 55507 | 100.6 | 1.141e-23 | 1.094 |
chr2:202143928 | rs10931936 | CASP8 | C>T | 30778 | 84282 | 42.17 | 8.386e-11 | 1.052 |
chr11:89017961 | rs1126809 | TYR | G>A | 33373 | 91846 | 36.91 | 1.237e-09 | 1.048 |
chr11:89011046 | rs1393350 | TYR | G>A | 33085 | 91164 | 32.33 | 1.3e-08 | 1.044 |
chr6:32548469 | rs3830133 | HLA-DRB1 | A>G | 13740 | 37016 | 32.2 | 1.393e-08 | 1.062 |
chr6:32549638 | rs72850244 | HLA-DRB1 | G>A | 13606 | 36671 | 32.18 | 1.406e-08 | 1.063 |
chr16:89986117 | Affx-35293625 | MC1R | C>T | 12018 | 32276 | 31.58 | 1.913e-08 | 1.066 |
chr6:32581889 | rs4530903 | - | C>T | 13502 | 36387 | 31.36 | 2.145e-08 | 1.062 |
chr16:89818732 | rs12931267 | FANCA | C>G | 11891 | 31922 | 31.32 | 2.191e-08 | 1.066 |
chr6:32583188 | rs113979555 | - | G>A | 13651 | 36797 | 31.23 | 2.289e-08 | 1.062 |
chr6:32504136 | rs66525318 | - | C>A | 14723 | 39792 | 31.02 | 2.559e-08 | 1.059 |
chr2:202215492 | rs13014235 | FLACC1 | G>C | 44463 | 123356 | 30.96 | 2.639e-08 | 1.041 |
chr6:32590844 | rs17533167 | - | G>C | 13542 | 36519 | 30.79 | 2.878e-08 | 1.061 |
chr6:32542638 | rs34451186 | - | T>C | 13672 | 36874 | 30.79 | 2.879e-08 | 1.061 |
chr11:89005253 | rs1847134 | TYR | A>C | 38307 | 105979 | 30.78 | 2.889e-08 | 1.042 |
chr6:32550580 | rs35662241 | HLA-DRB1 | C>T | 12644 | 34056 | 30.44 | 3.45e-08 | 1.063 |
chr6:32553626 | rs113647600 | HLA-DRB1 | C>A | 13608 | 36744 | 29.7 | 5.043e-08 | 1.06 |
chr6:32366421 | rs4248166 | BTNL2 | T>C | 18757 | 51076 | 29.56 | 5.426e-08 | 1.052 |
chr2:202122995 | rs3769823 | CASP8 | G>A | 32333 | 89194 | 29.5 | 5.604e-08 | 1.043 |