Abnormality of the nasopharynx

0001739

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Links

Sex Split

Interactive Plot

Statistics

Case	Control
19420	440774

Phenotype Comment

The nasopharynx (nasal part of the pharynx) lies behind the nose and above the level of the soft palate.

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr1:159174683	rs2814778	ACKR1	T>C	1215	18162	185.6	2.919e-42	1.502
chr8:145639681	rs1871534	SLC39A4	G>C	1138	17007	174.5	7.745e-40	1.503
chr23:64367019	rs7064929	-	G>A	1096	16470	153.8	2.614e-35	1.478
chr17:58508582	rs8071181	C17orf64	G>A	965	14452	145.1	2.034e-33	1.495
chr10:49451051	rs1623017	FRMPD2	C>A	1045	15955	142.4	7.956e-33	1.467
chr23:106146349	rs5962774	MORC4	T>C	729	10297	137.3	1.032e-31	1.569
chr9:129979758	rs3780318	RALGPS1	G>A	999	15242	136.6	1.46e-31	1.468
chr18:9536315	rs14336	RALBP1	A>C	821	12046	136.4	1.618e-31	1.525
chr5:33951693	rs16891982	SLC45A2	G>C	3476	63582	134.9	3.396e-31	1.235
chr17:29290106	rs55861543	-	C>T	1228	19531	134.0	5.571e-31	1.41
chr9:129984107	rs3739553	RALGPS1	G>A	952	14461	133.2	7.983e-31	1.474
chr17:29298304	rs7225888	RNF135	C>G	1181	18754	129.9	4.394e-30	1.412
chr9:117110112	Affx-52344420	AKNA	T>TG	904	13675	129.5	5.375e-30	1.481
chr3:188327555	rs7645635	LPP	T>C	891	13485	127.3	1.627e-29	1.48
chr17:29350769	rs8073072	-	T>G	1469	24237	127.3	1.577e-29	1.36
chr19:42393286	rs717225	ARHGEF1	A>G	1280	20663	127.2	1.651e-29	1.389
chr15:45695612	rs1346265	SPATA5L1	C>T	748	10922	127.0	1.868e-29	1.532
chr17:58506748	rs57928695	C17orf64	C>T	649	9198	126.5	2.439e-29	1.578
chr16:17200685	rs8046024	XYLT1	C>T	1168	18609	125.8	3.442e-29	1.407
chr3:391100	rs13060847	CHL1	G>A	745	10909	125.2	4.535e-29	1.529
chr1:79737167	rs12035767	ADGRL4	G>A	12143	264606	28.3	1.039e-07	1.061
chr5:165758259	rs1392381	-	A>G	8573	204641	27.45	1.613e-07	0.9366
chr1:79737283	rs7516463	ADGRL4	T>C	14365	314739	26.99	2.044e-07	1.057
chr2:212334445	rs75344028	ERBB4	G>A	1110	21599	25.68	4.04e-07	1.171
chr1:44086831	Affx-10469645	PTPRF	T>C	13020	285653	21.21	4.122e-06	1.052
chr11:26004292	rs2249568	-	A>G	8540	202377	20.56	5.781e-06	0.9448
chr2:214284239	rs55987430	SPAG16	G>A	1089	21519	20.41	6.249e-06	1.153
chr15:70810984	rs36116683	-	A>G	8311	197345	20.38	6.345e-06	0.9445
chr3:116372104	rs75863451	LSAMP	A>G	1804	36819	20.34	6.483e-06	1.118
chr4:99022772	rs75107971	STPG2	G>A	894	17418	20.31	6.578e-06	1.169
chr9:135546985	rs2583793	GTF3C4	G>A	3819	92958	19.99	7.778e-06	0.9252
chr1:39945297	rs2275767	MACF1	T>C	13516	297012	19.84	8.423e-06	1.05
chr17:32614966	rs41362349	CCL11	C>T	1180	23503	19.77	8.725e-06	1.144
chr10:59558545	rs117501069	-	G>A	956	18766	19.72	8.978e-06	1.161
chr5:165737894	rs17466466	-	G>A	6446	153855	19.51	9.991e-06	0.9403
chr25:2011557	rs6588882	-	A>G	7801	185100	19.44	1.036e-05	0.9445
chr2:220567392	rs2194776	-	C>T	983	25691	19.35	1.091e-05	0.8653
chr9:91984164	rs11507706	SEMA4D	G>A	3531	74516	19.26	1.142e-05	1.083
chr11:63283554	rs7131541	LGALS12	C>A	641	17317	19.17	1.197e-05	0.8375
chr3:44080795	rs17711434	-	G>A	1310	26320	19.15	1.21e-05	1.134

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr1:79737283	rs7516463	ADGRL4	T>C	14365	60272	30.12	4.067e-08	1.066
chr1:79737167	rs12035767	ADGRL4	G>A	12143	50699	29.48	5.662e-08	1.068
chr15:31799185	rs11858516	OTUD7A	G>A	5818	23753	24.41	7.803e-07	1.081
chr1:39945297	rs2275767	MACF1	T>C	13516	56882	22.42	2.191e-06	1.058
chr3:4082665	rs116521725	SUMF1	G>A	696	3665	20.94	4.74e-06	0.8264
chr3:44080795	rs17711434	-	G>A	1310	4992	20.0	7.725e-06	1.152
chr8:137312755	rs75111184	-	C>T	4245	17250	19.8	8.611e-06	1.084
chr17:32614966	rs41362349	CCL11	C>T	1180	4474	19.73	8.904e-06	1.159
chr21:46398792	rs112299973	-	C>T	5500	25534	19.51	9.997e-06	0.9314
chr5:165758259	rs1392381	-	A>G	8573	39213	19.35	1.085e-05	0.9422
chr11:26004292	rs2249568	-	A>G	8540	39005	18.77	1.477e-05	0.943
chr7:54690500	rs1454511	-	C>T	16819	71537	18.71	1.526e-05	1.051
chr13:60102330	rs1711783	-	T>C	6795	31272	18.32	1.872e-05	0.9388
chr7:72783383	rs2108235	-	G>A	5904	24355	18.31	1.877e-05	1.07
chr5:37709829	rs10461984	WDR70	G>A	17599	78818	18.3	1.882e-05	0.9527
chr2:40391735	rs61009582	SLC8A1	T>C	487	1712	18.27	1.922e-05	1.247
chr16:25168923	rs79117694	LCMT1	A>G	1644	6402	18.0	2.21e-05	1.127
chr1:245162068	rs10803250	EFCAB2	T>C	4281	17446	17.88	2.351e-05	1.079
chr1:79715648	rs74096446	ADGRL4	G>A	10028	42085	17.65	2.649e-05	1.056
chr1:9244795	rs61787669	-	G>T	11263	47453	17.61	2.708e-05	1.054

Associated Diseases ^ⓘ

ID	Name	Top Correlation
ICD: A048	Other specified bacterial intestinal infections	7/20
ICD: J039	Acute tonsillitis, unspecified	6/20
ICD: J350	Chronic tonsillitis	1/20
ICD: J351	Hypertrophy of tonsils	1/20
ICD: M549	Dorsalgia, unspecified	11/20

ID	Name	Top Correlation
ICD-10: A491	Streptococcal infection, unspecified	0/20
ICD-10: B349	Viral infection, unspecified	0/20
ICD-10: C099	Tonsil, unspecified	0/20
ICD-10: D140	Middle ear, nasal cavity and accessory sinuses	0/20
ICD-10: G553	Nerve root and plexus compressions in other dorsopathies	0/20
ICD-10: J019	Acute sinusitis, unspecified	0/20
ICD-10: J029	Acute pharyngitis, unspecified	0/20
ICD-10: J040	Acute laryngitis	0/20
ICD-10: J069	Acute upper respiratory infection, unspecified	0/20
ICD-10: J209	Acute bronchitis, unspecified	0/20
ICD-10: J312	Chronic pharyngitis	0/20
ICD-10: J328	Other chronic sinusitis	0/20
ICD-10: J36	Peritonsillar abscess	0/20
ICD-10: J398	Other specified diseases of upper respiratory tract	0/20
ICD-10: J40	Bronchitis, not specified as acute or chronic	0/20
ICD-10: K073	Anomalies of tooth position	0/20
ICD-10: L988	Other specified disorders of skin and subcutaneous tissue	0/20
ICD-10: M500	Cervical disk disorder with myelopathy	0/20
ICD-10: R070	Pain in throat	0/20

Abnormality of the nasopharynx

0001739

Normal Case/Contol ⓘ

Sibling Case/Control ⓘ

Links

Statistics

Phenotype Comment

Top SNP Information Show Normal Table Show Sibling SNP

Associated Diseases ⓘ Shared SNP diseases No shared SNP diseases

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Top SNP Information

Associated Diseases ^ⓘ