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ICD-10
HPO
Compare GWAS
Super Class
Abnormality of prenatal development or birth
Sub Class
Shoulder dystocia
Ventouse delivery
Forceps delivery
Cephalohematoma
Nuchal cord
Induced vaginal delivery
Caesarian section
Vaginal birth after Caesarian
Premature rupture of membranes
Therapeutic abortion
Breech presentation
Spontaneous abortion
Abnormal delivery
0001787
Normal Case/Contol
ⓘ
Sibling Case/Control
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
34019
426175
Phenotype Definition
An abnormality of the birth process. [HPO:probinson]
Top SNP Information
Show Normal Table
Show Sibling SNP
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr15:48426484
rs1426654
SLC24A5
A>G
3031
24495
477.1
9.356e-106
1.531
chr5:33951693
rs16891982
SLC45A2
G>C
6489
60569
452.7
1.82e-100
1.336
chr15:48392165
rs1834640
-
A>G
3361
28263
433.6
2.657e-96
1.471
chr23:128718936
rs2362937
OCRL
T>C
2538
17413
428.9
2.826e-95
1.56
chr5:33958959
rs28777
SLC45A2
A>C
5522
51470
385.2
9.288e-86
1.333
chr23:106146349
rs5962774
MORC4
T>C
1517
9509
369.5
2.434e-82
1.701
chr1:159174683
rs2814778
ACKR1
T>C
2166
17211
365.5
1.767e-81
1.551
chr23:64367019
rs7064929
-
G>A
2208
15358
349.6
5.074e-78
1.536
chr23:71628912
rs3012642
AL133500.1
A>G
2715
20009
322.5
4.22e-72
1.452
chr8:10557760
rs57041981
RP1L1
A>G
1861
14787
313.6
3.557e-70
1.549
chr8:145639681
rs1871534
SLC39A4
G>C
1998
16147
311.7
9.109e-70
1.524
chr19:42393286
rs717225
ARHGEF1
A>G
2345
19598
309.3
3.035e-69
1.474
chr19:42391425
rs28521795
ARHGEF1
G>A
2059
16763
309.0
3.543e-69
1.512
chr2:66725070
rs12995572
MEIS1
G>C
2810
24341
306.5
1.257e-68
1.424
chr13:72463541
rs1460465
-
A>G
1805
14319
305.8
1.755e-68
1.55
chr9:117110112
Affx-52344420
AKNA
T>TG
1656
12923
301.8
1.314e-67
1.575
chr6:136480972
rs9483910
PDE7B
C>T
2284
19086
301.4
1.652e-67
1.474
chr19:42392441
rs16975619
ARHGEF1
T>C
2158
17852
299.5
4.242e-67
1.488
chr13:72441665
rs3759505
-
C>T
1850
14865
295.4
3.299e-66
1.531
chr1:173579034
rs12065033
AL139142.2
C>T
1722
13619
295.3
3.524e-66
1.554
chr25:154999134
rs6642320
-
G>A
25041
298322
89.81
2.628e-21
1.083
chr25:155058865
rs73234550
-
G>A
1845
28166
69.92
6.187e-17
0.8159
chr25:154986418
rs142918084
-
C>G
2608
28093
57.12
4.107e-14
1.171
chr25:154935282
rs112437556
-
C>T
2436
26385
48.26
3.729e-12
1.162
chr25:155013081
rs146997510
-
T>A
1646
24503
47.46
5.6e-12
0.8375
chr25:155085824
rs1969622
-
G>C
8805
117910
42.15
8.437e-11
0.9259
chr25:2661556
rs73188900
-
A>C
1116
16998
41.24
1.344e-10
0.8188
chr25:155053713
rs28884873
-
G>A
9866
131183
38.53
5.391e-10
0.9323
chr25:2682149
rs311128
-
C>T
3662
41399
37.33
9.956e-10
1.114
chr25:2692710
rs2259750
-
A>G
11895
156707
37.22
1.053e-09
0.9379
chr25:154974730
rs144759332
-
C>G
1873
20326
36.13
1.844e-09
1.158
chr25:154998098
rs145347644
-
T>C
6337
73669
35.72
2.275e-09
1.086
chr25:155104608
rs5940618
-
G>A
13242
173791
33.71
6.411e-09
0.9432
chr25:155009856
rs700449
-
C>T
25009
304135
32.27
1.34e-08
1.048
chr23:154395148
rs113038688
-
C>T
1339
17017
31.13
2.412e-08
0.8521
chr25:2644302
rs1136470
-
C>T
9774
116040
30.35
3.606e-08
1.065
chr25:2676160
rs312232
-
C>T
15309
184289
29.52
5.535e-08
1.053
chr25:155183483
rs73237015
-
G>A
13085
156857
29.25
6.37e-08
1.056
chr25:2679949
rs311121
-
G>T
10132
120656
28.41
9.803e-08
1.062
chr25:2645366
rs311083
-
C>G
24257
312299
28.29
1.043e-07
0.9566
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr25:154999134
rs6642320
-
G>A
25041
34033
51.17
8.487e-13
1.079
chr25:155058865
rs73234550
-
G>A
1845
3172
43.02
5.43e-11
0.8231
chr25:154986418
rs142918084
-
C>G
2608
3245
27.41
1.646e-07
1.151
chr25:154935282
rs112437556
-
C>T
2436
3026
25.52
4.377e-07
1.15
chr25:155013081
rs146997510
-
T>A
1646
2723
24.03
9.48e-07
0.8565
chr25:154998098
rs145347644
-
T>C
6337
8346
23.78
1.082e-06
1.089
chr25:155085824
rs1969622
-
G>C
8805
13336
22.88
1.726e-06
0.9319
chr25:154974730
rs144759332
-
C>G
1873
2301
22.77
1.821e-06
1.162
chr1:243050615
rs76712070
-
A>G
4051
5222
22.75
1.842e-06
1.108
chr9:12624469
rs16929264
-
T>C
1632
1996
21.12
4.312e-06
1.168
chr25:2661556
rs73188900
-
A>C
1116
1883
21.06
4.452e-06
0.8396
chr13:107887593
rs59971745
FAM155A
G>A
5247
6887
20.99
4.605e-06
1.091
chr2:82799016
rs79840079
-
T>C
3064
3922
20.21
6.929e-06
1.117
chr6:421281
rs62389423
-
G>A
12340
16744
19.81
8.558e-06
1.06
chr3:26261389
rs62247626
-
C>G
3175
4985
19.76
8.801e-06
0.9017
chr3:7381444
rs77446136
GRM7
C>T
3628
5655
19.45
1.035e-05
0.908
chr3:12042835
rs17669026
-
A>G
11879
16115
19.17
1.194e-05
1.06
chr10:31870733
rs12264493
-
G>T
2767
4366
18.83
1.426e-05
0.8979
chr13:108593673
rs36072698
-
T>C
7981
12050
18.47
1.725e-05
0.936
chr18:22476692
rs4800192
-
A>G
16180
23907
18.23
1.957e-05
0.9513
Associated Diseases
ⓘ
Shared SNP diseases
No shared SNP diseases
ID
Name
Top Correlation
ICD: C772
Intra-abdominal lymph nodes
1/20
ICD: N856
Intra-uterine synechiae
4/20
ICD: O021
Missed abortion
9/20
ICD: O034
Incomplete, without complication
9/20
ICD: O039
Complete or unspecified, without complication
10/20
ICD: O049
Complete or unspecified, without complication
11/20
ICD: O149
Preeclampsia, unspecified
3/20
ICD: O200
Threatened abortion
1/20
ICD: O209
Haemorrhage in early pregnancy, unspecified
1/20
ICD: O244
Diabetes mellitus arising in pregnancy
6/20
ICD: O269
Pregnancy-related condition, unspecified
6/20
ICD: O365
Maternal care for poor foetal growth
5/20
ICD: O420
Premature rupture of membranes, onset of labour within 24 hours
6/20
ICD: O421
Premature rupture of membranes, onset of labour after 24 hours
2/20
ICD: O429
Premature rupture of membranes, unspecified
3/20
ICD: O469
Antepartum haemorrhage, unspecified
1/20
ICD: O470
False labour before 37 completed weeks of gestation
2/20
ICD: O471
False labour at or after 37 completed weeks of gestation
1/20
ICD: O479
False labour, unspecified
5/20
ICD: O60
Preterm delivery
9/20
ICD: O622
Other uterine inertia
1/20
ICD: O630
Prolonged first stage (of labour)
3/20
ICD: O639
Long labour, unspecified
2/20
ICD: O681
Labour and delivery complicated by meconium in amniotic fluid
10/20
ICD: O688
Labour and delivery complicated by other evidence of foetal stress
1/20
ICD: O689
Labour and delivery complicated by foetal stress, unspecified
6/20
ICD: O700
First degree perineal laceration during delivery
6/20
ICD: O701
Second degree perineal laceration during delivery
4/20
ICD: O720
Third-stage haemorrhage
1/20
ICD: O722
Delayed and secondary postpartum haemorrhage
1/20
ICD: O800
Spontaneous vertex delivery
10/20
ICD: O820
Delivery by elective Caesarean section
1/20
ICD: O821
Delivery by emergency Caesarean section
9/20
ICD: R101
Pain localised to upper abdomen
1/20
ID
Name
Top Correlation
ICD-10: H353
Degeneration of macula and posterior pole
0/20
ICD-10: J111
Influenza with other respiratory manifestations, virus not identified
0/20
ICD-10: O044
Incomplete, without complication
0/20
ICD-10: O321
Maternal care for breech presentation
0/20
ICD-10: O328
Maternal care for other malpresentation of foetus
0/20
ICD-10: O441
Placenta praevia with haemorrhage
0/20
ICD-10: O631
Prolonged second stage (of labour)
0/20
ICD-10: O660
Obstructed labour due to shoulder dystocia
0/20
ICD-10: O679
Intrapartum haemorrhage, unspecified
0/20
ICD-10: O691
Labour and delivery complicated by cord around neck, with compression
0/20
ICD-10: O692
Labour and delivery complicated by other cord entanglement
0/20
ICD-10: O702
Third degree perineal laceration during delivery
0/20
ICD-10: O756
Delayed delivery after spontaneous or unspecified rupture of membranes
0/20
ICD-10: O758
Other specified complications of labour and delivery
0/20
ICD-10: O814
Vacuum extractor delivery
0/20
ICD-10: O908
Other complications of the puerperium, not elsewhere classified
0/20
ICD-10: R000
Tachycardia, unspecified
0/20