Case | Control |
---|---|
77301 | 382893 |
An abnormality of leukocytes. [HPO:probinson]
Leukocytes are nucleated cells of the myeloid or lymphoid lineages, found in blood or other tissue.
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:396321 | rs12203592 | IRF4 | C>T | 35531 | 165674 | 128.5 | 8.785e-30 | 1.078 |
chr6:421281 | rs62389423 | - | G>A | 28892 | 135144 | 89.93 | 2.462e-21 | 1.07 |
chr22:42448761 | rs5758563 | WBP2NL | G>T | 2089 | 12287 | 54.36 | 1.671e-13 | 0.8391 |
chr23:64367019 | rs7064929 | - | G>A | 3326 | 14240 | 53.27 | 2.91e-13 | 1.153 |
chr6:475489 | rs12210050 | - | C>T | 32634 | 155705 | 43.73 | 3.769e-11 | 1.046 |
chr2:26113913 | rs78404020 | - | A>G | 2034 | 11783 | 43.71 | 3.816e-11 | 0.8525 |
chr23:106146349 | rs5962774 | MORC4 | T>C | 2118 | 8908 | 42.69 | 6.418e-11 | 1.172 |
chr2:150445102 | rs4618014 | - | A>G | 2366 | 13473 | 40.46 | 2.008e-10 | 0.867 |
chr25:2609031 | rs149548031 | - | C>T | 1512 | 8901 | 39.55 | 3.194e-10 | 0.839 |
chr6:93667780 | rs9363020 | - | G>A | 1765 | 10226 | 38.03 | 6.982e-10 | 0.8524 |
chr3:24359753 | rs9835859 | THRB | T>C | 3201 | 14060 | 37.77 | 7.977e-10 | 1.129 |
chr23:148151708 | Affx-34694529 | - | A>C | 1708 | 7143 | 36.84 | 1.284e-09 | 1.179 |
chr23:75648551 | rs7066146 | MAGEE1 | A>C | 3104 | 13560 | 36.34 | 1.657e-09 | 1.129 |
chr20:19214390 | rs6136658 | SLC24A3 | G>A | 2041 | 11634 | 35.32 | 2.792e-09 | 0.8664 |
chr23:50844180 | rs4486337 | - | C>T | 2176 | 9314 | 34.66 | 3.932e-09 | 1.152 |
chr16:31088625 | rs749670 | ZNF646 | A>G | 59194 | 299052 | 34.08 | 5.279e-09 | 0.9676 |
chr4:156685655 | rs3796562 | GUCY1B1 | T>C | 2044 | 11612 | 33.89 | 5.823e-09 | 0.869 |
chr5:167170953 | rs13436693 | TENM2 | A>C | 17274 | 81604 | 33.79 | 6.148e-09 | 1.053 |
chr16:31075175 | rs2303223 | ZNF668 | G>A | 59239 | 299227 | 33.55 | 6.937e-09 | 0.9679 |
chr16:31107689 | Affx-12649457 | - | C>T | 59413 | 300068 | 33.47 | 7.238e-09 | 0.968 |
chr6:396321 | rs12203592 | IRF4 | C>T | 35122 | 163793 | 133.0 | 9.196e-31 | 1.08 |
chr6:421281 | rs62389423 | - | G>A | 28529 | 133336 | 96.12 | 1.079e-22 | 1.073 |
chr6:475489 | rs12210050 | - | C>T | 32230 | 153766 | 46.5 | 9.158e-12 | 1.048 |
chr6:31238495 | rs17884390 | HLA-C | G>A | 6724 | 36042 | 37.12 | 1.108e-09 | 0.9206 |
chr6:31275211 | rs28367687 | HLA-B | G>C | 6851 | 36658 | 36.63 | 1.431e-09 | 0.9217 |
chr6:31236289 | rs114472942 | - | C>A | 6671 | 35710 | 35.31 | 2.809e-09 | 0.9222 |
chr6:31408265 | rs2524276 | - | C>A | 10553 | 55547 | 35.24 | 2.909e-09 | 0.9368 |
chr6:31386019 | rs9295990 | - | T>G | 11585 | 60757 | 34.67 | 3.897e-09 | 0.9398 |
chr6:31418022 | rs2596457 | - | A>G | 11641 | 61043 | 34.61 | 4.022e-09 | 0.94 |
chr6:31234438 | rs28397309 | - | A>C | 6667 | 35649 | 34.53 | 4.197e-09 | 0.923 |
chr6:31425985 | rs2596480 | - | C>T | 11621 | 60941 | 34.49 | 4.278e-09 | 0.94 |
chr6:31237257 | rs17879162 | HLA-C | C>T | 6681 | 35711 | 34.22 | 4.91e-09 | 0.9234 |
chr6:31394700 | rs2516472 | - | A>G | 11604 | 60822 | 33.98 | 5.579e-09 | 0.9404 |
chr6:31253716 | rs28367592 | HLA-B | C>G | 6795 | 36279 | 33.9 | 5.79e-09 | 0.9243 |
chr6:31243495 | rs6913377 | HLA-B | G>A | 6762 | 36102 | 33.73 | 6.324e-09 | 0.9243 |
chr6:31230924 | rs7747738 | - | C>T | 6695 | 35751 | 33.54 | 6.967e-09 | 0.9242 |
chr6:31258141 | rs28367594 | HLA-B | G>A | 6797 | 36278 | 33.41 | 7.473e-09 | 0.9248 |
chr6:31259446 | rs28367596 | HLA-B | A>T | 6764 | 36104 | 33.32 | 7.809e-09 | 0.9248 |
chr6:31233651 | rs28397307 | - | G>A | 6666 | 35597 | 33.32 | 7.837e-09 | 0.9243 |
chr6:31237764 | Affx-52368559 | HLA-C | T>TAA | 6432 | 34390 | 33.29 | 7.945e-09 | 0.923 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:396321 | rs12203592 | IRF4 | C>T | 35122 | 85794 | 81.66 | 1.618e-19 | 1.067 |
chr6:421281 | rs62389423 | - | G>A | 28529 | 69629 | 65.3 | 6.434e-16 | 1.065 |
chr6:31324615 | rs1050529 | HLA-B | C>T | 43178 | 114348 | 40.9 | 1.6e-10 | 0.9579 |
chr6:31275211 | rs28367687 | HLA-B | G>C | 6851 | 19203 | 40.36 | 2.118e-10 | 0.9126 |
chr6:31238495 | rs17884390 | HLA-C | G>A | 6724 | 18858 | 39.73 | 2.914e-10 | 0.9125 |
chr6:31115207 | rs1265070 | CCHCR1 | C>T | 18901 | 51013 | 38.19 | 6.424e-10 | 0.9453 |
chr6:32587782 | rs9271414 | - | T>C | 52176 | 130603 | 38.15 | 6.546e-10 | 1.04 |
chr6:31234438 | rs28397309 | - | A>C | 6667 | 18667 | 37.89 | 7.47e-10 | 0.9141 |
chr6:31236289 | rs114472942 | - | C>A | 6671 | 18681 | 37.78 | 7.927e-10 | 0.9143 |
chr6:31237764 | Affx-52368559 | HLA-C | T>TAA | 6432 | 18016 | 37.45 | 9.386e-10 | 0.9132 |
chr6:31418022 | rs2596457 | - | A>G | 11641 | 31874 | 37.26 | 1.032e-09 | 0.9335 |
chr6:31253716 | rs28367592 | HLA-B | C>G | 6795 | 18993 | 37.16 | 1.089e-09 | 0.9156 |
chr6:31237257 | rs17879162 | HLA-C | C>T | 6681 | 18690 | 37.14 | 1.1e-09 | 0.915 |
chr6:31259446 | rs28367596 | HLA-B | A>T | 6764 | 18909 | 36.94 | 1.216e-09 | 0.9157 |
chr6:31386019 | rs9295990 | - | T>G | 11585 | 31713 | 36.88 | 1.258e-09 | 0.9337 |
chr6:31408265 | rs2524276 | - | C>A | 10553 | 28986 | 36.84 | 1.281e-09 | 0.931 |
chr6:31425985 | rs2596480 | - | C>T | 11621 | 31810 | 36.78 | 1.325e-09 | 0.9339 |
chr6:31243495 | rs6913377 | HLA-B | G>A | 6762 | 18896 | 36.75 | 1.341e-09 | 0.9159 |
chr6:31230924 | rs7747738 | - | C>T | 6695 | 18715 | 36.67 | 1.397e-09 | 0.9156 |
chr6:31394700 | rs2516472 | - | A>G | 11604 | 31748 | 36.29 | 1.699e-09 | 0.9343 |