Case | Control |
---|---|
61414 | 398780 |
An abnormality of the upper respiratory tract. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 7450 | 59608 | 269.8 | 1.273e-60 | 0.8124 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 6285 | 50707 | 244.5 | 4.175e-55 | 0.8072 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 4484 | 36663 | 195.2 | 2.32e-44 | 0.7988 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 4470 | 36510 | 192.7 | 8.095e-44 | 0.7997 |
chr6:93667780 | rs9363020 | - | G>A | 1090 | 10901 | 177.6 | 1.657e-40 | 0.6557 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 2894 | 24632 | 176.1 | 3.501e-40 | 0.7687 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 33135 | 233263 | 173.7 | 1.133e-39 | 0.914 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 10611 | 79497 | 169.9 | 7.695e-39 | 0.8688 |
chr2:135837906 | rs7570971 | RAB3GAP1 | C>A | 38049 | 265524 | 159.0 | 1.833e-36 | 0.9208 |
chr23:71651365 | rs12007867 | AL133500.1 | C>T | 951 | 9720 | 156.4 | 6.794e-36 | 0.6544 |
chr15:48392165 | rs1834640 | - | A>G | 3434 | 28190 | 153.8 | 2.528e-35 | 0.797 |
chr6:170602429 | rs17860704 | DLL1 | T>C | 1100 | 10618 | 148.8 | 3.098e-34 | 0.6799 |
chr2:144305674 | rs6704689 | ARHGAP15 | A>G | 24450 | 149325 | 146.9 | 8.25e-34 | 1.097 |
chr6:93645908 | rs77956657 | - | T>C | 1523 | 13803 | 142.9 | 6.068e-33 | 0.7237 |
chr16:57068106 | rs3995818 | NLRC5 | A>G | 1474 | 13410 | 141.8 | 1.088e-32 | 0.7209 |
chr2:135911422 | Affx-17900027 | RAB3GAP1 | T>C | 30000 | 210606 | 140.3 | 2.248e-32 | 0.9198 |
chr1:54009583 | rs41363049 | GLIS1 | C>T | 1264 | 11735 | 137.4 | 1.009e-31 | 0.7068 |
chr16:11366258 | rs59124406 | RMI2 | G>A | 1588 | 14201 | 136.4 | 1.599e-31 | 0.7336 |
chr1:9660299 | rs60097082 | TMEM201 | A>G | 1609 | 14352 | 136.1 | 1.888e-31 | 0.7353 |
chr6:396321 | rs12203592 | IRF4 | C>T | 28085 | 173120 | 132.5 | 1.164e-30 | 1.087 |
chr2:144305674 | rs6704689 | ARHGAP15 | A>G | 23446 | 140863 | 147.5 | 6.017e-34 | 1.1 |
chr6:396321 | rs12203592 | IRF4 | C>T | 27760 | 171155 | 79.68 | 4.405e-19 | 1.068 |
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 25601 | 157689 | 76.82 | 1.871e-18 | 1.069 |
chr2:144403796 | rs13409480 | ARHGAP15 | A>G | 61225 | 387231 | 71.66 | 2.557e-17 | 1.053 |
chr6:32583357 | rs6931277 | - | A>T | 23878 | 147078 | 69.65 | 7.089e-17 | 1.067 |
chr6:32577973 | rs532965 | - | T>G | 24375 | 150292 | 68.96 | 1.005e-16 | 1.066 |
chr2:144428286 | rs12691689 | ARHGAP15 | C>T | 37300 | 233054 | 67.69 | 1.918e-16 | 1.056 |
chr6:32387809 | rs2395163 | - | T>C | 28300 | 175529 | 65.59 | 5.551e-16 | 1.061 |
chr6:32582650 | rs3104413 | - | C>G | 24144 | 149050 | 65.53 | 5.71e-16 | 1.065 |
chr2:144301488 | rs34406675 | ARHGAP15 | G>A | 9663 | 57693 | 63.31 | 1.764e-15 | 1.095 |
chr6:32402778 | rs9268614 | - | T>G | 28686 | 178433 | 59.07 | 1.522e-14 | 1.057 |
chr6:32577380 | rs660895 | - | A>G | 27039 | 167928 | 58.84 | 1.71e-14 | 1.059 |
chr6:32581973 | rs521539 | - | G>A | 27057 | 168038 | 58.83 | 1.722e-14 | 1.059 |
chr9:136137065 | rs687621 | ABO | A>G | 37936 | 254811 | 56.36 | 6.042e-14 | 0.9514 |
chr2:144450181 | rs1996447 | ARHGAP15 | T>G | 44319 | 279006 | 55.88 | 7.708e-14 | 1.049 |
chr9:136139265 | rs657152 | ABO | C>A | 40503 | 271468 | 55.33 | 1.022e-13 | 0.9527 |
chr9:136142203 | rs514659 | ABO | A>C | 36699 | 246435 | 55.25 | 1.063e-13 | 0.9513 |
chr6:421281 | rs62389423 | - | G>A | 22521 | 139344 | 54.86 | 1.295e-13 | 1.061 |
chr9:136149229 | rs505922 | ABO | T>C | 37836 | 254057 | 54.38 | 1.656e-13 | 0.9523 |
chr9:136142355 | rs643434 | ABO | G>A | 40639 | 272385 | 54.31 | 1.716e-13 | 0.9532 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 7450 | 12090 | 186.8 | 1.599e-42 | 0.8125 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 6285 | 10331 | 177.8 | 1.476e-40 | 0.8035 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 4484 | 7502 | 148.1 | 4.598e-34 | 0.7916 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 4470 | 7477 | 147.3 | 6.866e-34 | 0.7918 |
chr2:144305674 | rs6704689 | ARHGAP15 | A>G | 24450 | 29871 | 132.5 | 1.15e-30 | 1.116 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 10611 | 16143 | 118.0 | 1.692e-27 | 0.8676 |
chr23:71651365 | rs12007867 | AL133500.1 | C>T | 951 | 1977 | 117.4 | 2.309e-27 | 0.6525 |
chr23:23842411 | rs73477450 | - | T>G | 1162 | 2310 | 113.2 | 1.949e-26 | 0.6818 |
chr6:93667780 | rs9363020 | - | G>A | 1090 | 2091 | 95.8 | 1.274e-22 | 0.6939 |
chr26:10400 | Affx-89025669 | - | C>T | 712 | 1467 | 92.53 | 6.629e-22 | 0.6448 |
chr16:28974658 | rs8044999 | NFATC2IP | A>G | 2667 | 4459 | 86.05 | 1.756e-20 | 0.7951 |
chr23:22984798 | rs4074765 | - | A>G | 1351 | 2500 | 83.73 | 5.68e-20 | 0.7333 |
chr23:25285210 | rs6629997 | - | C>T | 2632 | 4468 | 82.57 | 1.017e-19 | 0.7976 |
chr16:57068106 | rs3995818 | NLRC5 | A>G | 1474 | 2636 | 81.97 | 1.379e-19 | 0.7443 |
chr10:78197086 | rs1873467 | LRMDA | C>T | 942 | 1804 | 81.72 | 1.566e-19 | 0.6956 |
chr13:36836661 | rs78648701 | CCDC169-SOHLH2 | C>G | 1034 | 1948 | 81.23 | 2.011e-19 | 0.707 |
chr10:78274538 | rs2130801 | LRMDA | A>G | 1130 | 2099 | 81.06 | 2.192e-19 | 0.7172 |
chr16:28995057 | rs11859822 | SPNS1 | T>C | 3281 | 5337 | 80.88 | 2.401e-19 | 0.8171 |
chr6:93645908 | rs77956657 | - | T>C | 1523 | 2693 | 77.88 | 1.093e-18 | 0.7528 |
chr3:124905146 | rs6784701 | SLC12A8 | C>T | 1517 | 2677 | 76.29 | 2.454e-18 | 0.7545 |
chr2:144305674 | rs6704689 | ARHGAP15 | A>G | 23446 | 28162 | 128.1 | 1.045e-29 | 1.117 |
chr2:144301488 | rs34406675 | ARHGAP15 | G>A | 9663 | 11461 | 60.5 | 7.363e-15 | 1.118 |
chr10:25815417 | rs3923088 | GPR158 | A>G | 57894 | 73817 | 57.03 | 4.291e-14 | 1.059 |
chr2:144403796 | rs13409480 | ARHGAP15 | A>G | 61225 | 78195 | 56.27 | 6.326e-14 | 1.059 |
chr10:25821318 | rs10508700 | GPR158 | T>C | 57274 | 77502 | 52.39 | 4.554e-13 | 0.9465 |
chr2:144428286 | rs12691689 | ARHGAP15 | C>T | 37300 | 47026 | 51.77 | 6.232e-13 | 1.061 |
chr9:136137065 | rs687621 | ABO | A>G | 37936 | 51837 | 48.23 | 3.792e-12 | 0.9448 |
chr9:136142203 | rs514659 | ABO | A>C | 36699 | 50149 | 46.51 | 9.124e-12 | 0.9451 |
chr9:136149229 | rs505922 | ABO | T>C | 37836 | 51658 | 45.7 | 1.38e-11 | 0.9463 |
chr9:136143442 | rs612169 | ABO | A>G | 38014 | 51902 | 45.09 | 1.882e-11 | 0.9467 |
chr9:136139265 | rs657152 | ABO | C>A | 40503 | 55164 | 44.78 | 2.202e-11 | 0.9477 |
chr1:234362972 | rs10910388 | SLC35F3 | A>G | 16477 | 20300 | 44.12 | 3.088e-11 | 1.078 |
chr9:136142355 | rs643434 | ABO | G>A | 40639 | 55317 | 43.1 | 5.205e-11 | 0.9487 |
chr9:136132908 | rs8176719 | ABO | T>TC | 40547 | 55251 | 42.95 | 5.618e-11 | 0.9487 |
chr20:62343956 | rs2315008 | ZGPAT | G>T | 41269 | 52368 | 42.76 | 6.176e-11 | 1.054 |
chr20:62337406 | rs6011040 | ARFRP1 | G>A | 41324 | 52469 | 42.17 | 8.381e-11 | 1.054 |
chr20:62349586 | rs4809330 | ZGPAT | G>A | 41396 | 52581 | 40.78 | 1.707e-10 | 1.053 |
chr9:136155000 | rs635634 | - | C>T | 21513 | 29748 | 38.59 | 5.229e-10 | 0.9405 |
chr2:144450181 | rs1996447 | ARHGAP15 | T>G | 44319 | 56468 | 37.48 | 9.251e-10 | 1.05 |
chr10:25845329 | rs1414052 | GPR158 | T>C | 56562 | 76237 | 37.27 | 1.027e-09 | 0.9546 |