Case | Control |
---|---|
97755 | 362439 |
Any structural anomaly of the lung. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 5057 | 22469 | 133.4 | 7.512e-31 | 0.8337 |
chr6:170242949 | rs9396958 | - | T>C | 2838 | 13276 | 124.0 | 8.508e-29 | 0.7934 |
chr15:48392165 | rs1834640 | - | A>G | 5966 | 25658 | 104.3 | 1.756e-24 | 0.8617 |
chr6:22050187 | rs1736507 | - | C>A | 2578 | 11935 | 103.3 | 2.831e-24 | 0.8011 |
chr6:396321 | rs12203592 | IRF4 | C>T | 44256 | 156949 | 99.68 | 1.79e-23 | 1.063 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 54614 | 211784 | 98.13 | 3.928e-23 | 0.946 |
chr2:211717706 | rs12995612 | - | C>G | 2993 | 13479 | 90.48 | 1.865e-21 | 0.8242 |
chr2:135837906 | rs7570971 | RAB3GAP1 | C>A | 62503 | 241070 | 90.14 | 2.224e-21 | 0.9502 |
chr20:19214390 | rs6136658 | SLC24A3 | G>A | 2453 | 11222 | 86.7 | 1.265e-20 | 0.8118 |
chr1:29783282 | rs6676357 | - | T>C | 1752 | 8302 | 85.38 | 2.463e-20 | 0.7839 |
chr2:135911422 | Affx-17900027 | RAB3GAP1 | T>C | 49369 | 191237 | 80.92 | 2.355e-19 | 0.9492 |
chr24:14850341 | rs2032598 | USP9Y | T>C | 430 | 2382 | 78.41 | 8.373e-19 | 0.6299 |
chr5:177964645 | rs10479497 | COL23A1 | C>T | 2036 | 9342 | 74.44 | 6.239e-18 | 0.8092 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 2647 | 11816 | 72.29 | 1.861e-17 | 0.8321 |
chr1:236085940 | rs12038310 | - | C>T | 2811 | 12465 | 71.3 | 3.063e-17 | 0.8375 |
chr2:235130071 | rs10177096 | - | A>G | 4003 | 17247 | 70.91 | 3.734e-17 | 0.8615 |
chr2:26113913 | rs78404020 | - | A>G | 2528 | 11289 | 69.42 | 7.949e-17 | 0.8317 |
chr2:136643555 | rs309125 | - | C>T | 48972 | 189172 | 69.24 | 8.735e-17 | 0.9528 |
chr16:7465748 | rs4786166 | RBFOX1 | C>T | 3318 | 14476 | 69.23 | 8.759e-17 | 0.851 |
chr6:421281 | rs62389423 | - | G>A | 35981 | 128055 | 68.95 | 1.012e-16 | 1.056 |
chr6:396321 | rs12203592 | IRF4 | C>T | 43751 | 155164 | 83.51 | 6.35e-20 | 1.058 |
chr6:421281 | rs62389423 | - | G>A | 35526 | 126339 | 58.54 | 1.988e-14 | 1.052 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 46113 | 176347 | 45.91 | 1.239e-11 | 0.9602 |
chr2:135837906 | rs7570971 | RAB3GAP1 | C>A | 53654 | 204232 | 41.63 | 1.104e-10 | 0.9639 |
chr2:136643555 | rs309125 | - | C>T | 41757 | 159537 | 38.04 | 6.915e-10 | 0.9625 |
chr2:136594158 | rs2236783 | LCT | A>G | 40156 | 153512 | 37.37 | 9.779e-10 | 0.9622 |
chr1:78623626 | rs17391694 | - | C>T | 27554 | 98383 | 35.51 | 2.536e-09 | 1.045 |
chr5:82815170 | rs61749613 | VCAN | A>G | 7593 | 30328 | 35.5 | 2.546e-09 | 0.925 |
chr19:18726211 | rs57263982 | TMEM59L | C>G | 19774 | 70218 | 32.35 | 1.29e-08 | 1.049 |
chr2:135911422 | Affx-17900027 | RAB3GAP1 | T>C | 41225 | 157193 | 32.17 | 1.41e-08 | 0.9653 |
chr9:128721295 | rs7867968 | PBX3 | T>C | 59887 | 226796 | 31.25 | 2.265e-08 | 0.9696 |
chr16:77049257 | rs283995 | - | A>G | 89484 | 336994 | 30.86 | 2.768e-08 | 0.9719 |
chr9:128487082 | rs7018617 | - | T>G | 70816 | 267523 | 30.77 | 2.899e-08 | 0.971 |
chr1:201869257 | rs2820312 | LMOD1 | G>A | 67032 | 243721 | 30.63 | 3.124e-08 | 1.03 |
chr1:201860626 | rs2250377 | SHISA4 | G>A | 66549 | 242131 | 30.2 | 3.899e-08 | 1.03 |
chr16:77103829 | Affx-13207301 | - | C>T | 80231 | 302465 | 30.18 | 3.944e-08 | 0.9719 |
chr17:38364764 | rs55673000 | - | C>T | 30609 | 109855 | 29.81 | 4.756e-08 | 1.039 |
chr1:108164135 | rs4638153 | VAV3 | A>G | 17514 | 67855 | 29.6 | 5.316e-08 | 0.9528 |
chr6:26354464 | rs36085954 | - | G>A | 29229 | 104843 | 29.09 | 6.907e-08 | 1.039 |
chr6:32626119 | rs28584179 | - | C>T | 16854 | 65308 | 28.56 | 9.062e-08 | 0.9528 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:144305674 | rs6704689 | ARHGAP15 | A>G | 34753 | 16855 | 58.89 | 1.67e-14 | 0.9233 |
chr2:102955082 | rs13408661 | IL1RL1 | G>A | 24578 | 10346 | 50.81 | 1.016e-12 | 1.093 |
chr2:102954213 | rs72823646 | IL1RL1 | G>A | 27158 | 11459 | 50.47 | 1.208e-12 | 1.089 |
chr2:102931534 | rs72823632 | IL1RL1 | C>T | 27402 | 11576 | 49.71 | 1.785e-12 | 1.088 |
chr2:102953617 | rs3771180 | IL1RL1 | G>T | 27203 | 11492 | 49.31 | 2.187e-12 | 1.087 |
chr6:32428115 | rs9268835 | - | G>A | 62593 | 29506 | 40.3 | 2.174e-10 | 0.9467 |
chr6:32374622 | rs3763307 | BTNL2 | A>T | 59170 | 27919 | 39.2 | 3.835e-10 | 0.9467 |
chr6:32376176 | rs3763311 | - | C>T | 61045 | 28777 | 39.12 | 3.985e-10 | 0.9472 |
chr6:32428062 | rs9268833 | - | C>T | 62615 | 29500 | 38.97 | 4.314e-10 | 0.9476 |
chr6:32376746 | rs3763316 | - | C>T | 59248 | 27943 | 38.28 | 6.118e-10 | 0.9473 |
chr6:32379489 | rs9268516 | - | C>T | 59359 | 27980 | 38.18 | 6.437e-10 | 0.9474 |
chr6:32583357 | rs6931277 | - | A>T | 36900 | 17648 | 38.11 | 6.694e-10 | 0.9388 |
chr6:32363844 | rs9268480 | BTNL2 | C>T | 59271 | 27936 | 38.08 | 6.774e-10 | 0.9475 |
chr6:32577973 | rs532965 | - | T>G | 37701 | 18007 | 38.01 | 7.035e-10 | 0.9395 |
chr6:32349946 | rs9268456 | - | C>A | 59209 | 27921 | 37.8 | 7.828e-10 | 0.9476 |
chr6:32345052 | rs9268429 | - | A>G | 59357 | 27977 | 37.74 | 8.075e-10 | 0.9477 |
chr6:32343686 | rs9268418 | - | T>C | 59352 | 27959 | 37.72 | 8.161e-10 | 0.9477 |
chr6:32350776 | rs9268459 | - | G>A | 59338 | 27962 | 37.35 | 9.849e-10 | 0.948 |
chr6:32341473 | rs9268403 | - | T>C | 58981 | 27807 | 37.34 | 9.903e-10 | 0.9479 |
chr6:32364356 | rs9268481 | BTNL2 | A>G | 59230 | 27906 | 37.29 | 1.017e-09 | 0.948 |