Case | Control |
---|---|
113206 | 346988 |
Any abnormality of the large intestine. [HPO:probinson]
The large intestine comprises the cecum and colon.
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 14910 | 52148 | 189.1 | 5.025e-43 | 0.8764 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 5764 | 21762 | 187.6 | 1.055e-42 | 0.8145 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 12593 | 44399 | 179.4 | 6.406e-41 | 0.8702 |
chr15:48392165 | rs1834640 | - | A>G | 6748 | 24876 | 170.2 | 6.776e-39 | 0.834 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 4062 | 15315 | 129.2 | 6.245e-30 | 0.817 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 20637 | 69471 | 126.5 | 2.427e-29 | 0.9109 |
chr23:128718936 | rs2362937 | OCRL | T>C | 4278 | 15673 | 126.2 | 2.828e-29 | 0.8222 |
chr13:72441665 | rs3759505 | - | C>T | 3474 | 13241 | 122.9 | 1.445e-28 | 0.8085 |
chr9:117110112 | Affx-52344420 | AKNA | T>TG | 2996 | 11583 | 120.9 | 3.975e-28 | 0.7974 |
chr5:54280007 | rs1508890 | ESM1 | C>A | 3869 | 14547 | 119.3 | 8.854e-28 | 0.8196 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 3809 | 14336 | 119.1 | 9.986e-28 | 0.8185 |
chr6:170242949 | rs9396958 | - | T>C | 3350 | 12764 | 117.7 | 2.055e-27 | 0.8092 |
chr1:207782889 | rs17047661 | CR1 | A>G | 2946 | 11373 | 117.4 | 2.29e-27 | 0.7985 |
chr23:71628912 | rs3012642 | AL133500.1 | A>G | 4947 | 17777 | 117.2 | 2.539e-27 | 0.8384 |
chr6:3185712 | rs7754077 | - | C>T | 3935 | 14737 | 116.7 | 3.352e-27 | 0.8226 |
chr9:129557967 | rs7863211 | - | G>A | 4056 | 15146 | 116.5 | 3.622e-27 | 0.8251 |
chr16:28995057 | rs11859822 | SPNS1 | T>C | 6411 | 23025 | 115.9 | 4.995e-27 | 0.8572 |
chr5:147671850 | rs7724380 | - | G>A | 4283 | 15900 | 115.3 | 6.924e-27 | 0.83 |
chr17:58786625 | rs2643103 | BCAS3 | G>A | 4073 | 15185 | 115.2 | 7.128e-27 | 0.8263 |
chr6:396321 | rs12203592 | IRF4 | C>T | 51007 | 150198 | 113.5 | 1.707e-26 | 1.064 |
chr9:136149229 | rs505922 | ABO | T>C | 70091 | 221802 | 79.79 | 4.163e-19 | 0.9544 |
chr6:396321 | rs12203592 | IRF4 | C>T | 50457 | 148458 | 79.47 | 4.899e-19 | 1.054 |
chr9:136139265 | rs657152 | ABO | C>A | 75026 | 236945 | 77.9 | 1.083e-18 | 0.9557 |
chr9:136143442 | rs612169 | ABO | A>G | 70413 | 222730 | 77.89 | 1.091e-18 | 0.955 |
chr9:136132908 | rs8176719 | ABO | T>TC | 75048 | 237235 | 77.59 | 1.269e-18 | 0.9557 |
chr9:136142355 | rs643434 | ABO | G>A | 75286 | 237738 | 77.52 | 1.311e-18 | 0.9558 |
chr9:136137065 | rs687621 | ABO | A>G | 70320 | 222427 | 76.58 | 2.116e-18 | 0.9553 |
chr9:136142203 | rs514659 | ABO | A>C | 68066 | 215068 | 72.3 | 1.851e-17 | 0.956 |
chr6:421281 | rs62389423 | - | G>A | 41086 | 120779 | 65.32 | 6.381e-16 | 1.052 |
chr24:14902414 | rs20321 | USP9Y | G>A | 2405 | 6749 | 48.69 | 2.998e-12 | 1.185 |
chr9:136147702 | rs581107 | ABO | T>C | 106267 | 320071 | 44.59 | 2.433e-11 | 1.033 |
chr18:46453463 | rs4939827 | SMAD7 | T>C | 106568 | 332110 | 43.37 | 4.54e-11 | 0.9685 |
chr2:56040099 | rs10199082 | - | T>C | 31299 | 92450 | 37.5 | 9.134e-10 | 1.044 |
chr9:136153875 | rs651007 | - | C>T | 45816 | 144590 | 37.24 | 1.044e-09 | 0.964 |
chr6:475489 | rs12210050 | - | C>T | 46755 | 139241 | 36.09 | 1.886e-09 | 1.037 |
chr9:136154168 | rs579459 | - | T>C | 45843 | 144590 | 35.97 | 2.008e-09 | 0.9646 |
chr9:136149399 | rs507666 | ABO | G>A | 40407 | 127717 | 35.66 | 2.345e-09 | 0.9631 |
chr9:136154867 | rs495828 | - | G>T | 45776 | 144372 | 35.45 | 2.621e-09 | 0.9648 |
chr6:32359821 | rs17577980 | - | G>A | 15117 | 48845 | 34.89 | 3.493e-09 | 0.9447 |
chr9:136155000 | rs635634 | - | C>T | 40136 | 126826 | 34.5 | 4.259e-09 | 0.9635 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:31892484 | rs497309 | C2 | A>C | 29557 | 11899 | 71.7 | 2.501e-17 | 0.9057 |
chr6:32096001 | rs3130288 | ATF6B | C>A | 29315 | 11808 | 71.22 | 3.195e-17 | 0.9057 |
chr6:31918860 | rs1270942 | AL645922.1 | A>G | 29589 | 11908 | 70.87 | 3.81e-17 | 0.9062 |
chr6:32059867 | rs1150753 | TNXB | A>G | 29513 | 11878 | 70.59 | 4.394e-17 | 0.9063 |
chr6:32064726 | rs1150752 | TNXB | T>C | 29498 | 11869 | 70.09 | 5.667e-17 | 0.9066 |
chr6:31940897 | rs389884 | STK19 | A>G | 29548 | 11882 | 69.84 | 6.441e-17 | 0.9068 |
chr6:31870326 | rs558702 | C2 | G>A | 29565 | 11886 | 69.23 | 8.765e-17 | 0.9072 |
chr6:32080191 | rs1269852 | TNXB | G>C | 29337 | 11787 | 67.99 | 1.64e-16 | 0.9077 |
chr6:32408497 | rs3135394 | HLA-DRA | A>G | 29224 | 11742 | 67.69 | 1.917e-16 | 0.9078 |
chr6:32194630 | rs3096690 | - | G>C | 29941 | 12016 | 66.85 | 2.927e-16 | 0.9092 |
chr6:32303692 | rs1265754 | TSBP1 | T>A | 29359 | 11791 | 66.77 | 3.056e-16 | 0.9085 |
chr6:32333827 | rs3129927 | TSBP1 | A>C | 29350 | 11785 | 66.64 | 3.266e-16 | 0.9086 |
chr6:31807540 | rs3130679 | - | A>G | 29692 | 11922 | 66.6 | 3.326e-16 | 0.909 |
chr6:32325562 | rs2395149 | TSBP1 | G>A | 29325 | 11777 | 66.35 | 3.777e-16 | 0.9088 |
chr6:32261252 | rs7775397 | TSBP1 | T>G | 29363 | 11784 | 66.29 | 3.897e-16 | 0.9088 |
chr6:31727474 | rs3117577 | MSH5 | A>G | 29821 | 11963 | 66.09 | 4.298e-16 | 0.9095 |
chr6:31726253 | rs3117575 | MSH5 | T>C | 29852 | 11971 | 65.95 | 4.619e-16 | 0.9096 |
chr6:32302382 | rs1265757 | TSBP1 | C>T | 29300 | 11762 | 65.94 | 4.642e-16 | 0.909 |
chr6:31514247 | rs9267488 | ATP6V1G2-DDX39B | A>G | 31216 | 12496 | 65.73 | 5.159e-16 | 0.9113 |
chr6:31725230 | rs3117574 | MSH5 | G>A | 29822 | 11954 | 64.8 | 8.294e-16 | 0.9103 |