Gastrointestinal carcinoma

0002672

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

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Interactive Plot

Statistics

Case	Control
17685	442509

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr15:48426484	rs1426654	SLC24A5	A>G	677	26849	135.0	3.245e-31	0.636
chr5:33951693	rs16891982	SLC45A2	G>C	2003	65055	123.3	1.191e-28	0.7723
chr15:48392165	rs1834640	-	A>G	838	30786	114.0	1.303e-26	0.6866
chr5:33958959	rs28777	SLC45A2	A>C	1713	55279	98.67	2.987e-23	0.7796
chr2:171380643	rs34020565	MYO3B	T>G	668	24191	83.07	7.92e-20	0.6985
chr1:159174683	rs2814778	ACKR1	T>C	494	18883	81.75	1.543e-19	0.6623
chr6:100241479	rs9495569	-	A>G	602	22101	80.59	2.78e-19	0.6895
chr5:33951116	rs35397	SLC45A2	T>G	2916	87192	79.8	4.139e-19	0.8394
chr5:54280007	rs1508890	ESM1	C>A	473	17943	75.54	3.584e-18	0.6671
chr2:3313043	rs73133173	EIPR1	A>C	351	14112	73.38	1.069e-17	0.6306
chr19:42393286	rs717225	ARHGEF1	A>G	590	21353	72.84	1.403e-17	0.6996
chr19:42392441	rs16975619	ARHGEF1	T>C	533	19477	69.55	7.462e-17	0.693
chr6:136480972	rs9483910	PDE7B	C>T	577	20793	69.51	7.588e-17	0.7027
chr5:147863034	rs9325101	HTR4	A>G	429	16311	68.96	1.006e-16	0.6664
chr19:42391425	rs28521795	ARHGEF1	G>A	496	18326	68.75	1.117e-16	0.6855
chr19:42392310	rs2288509	ARHGEF1	C>T	459	17085	65.74	5.139e-16	0.6813
chr17:29290106	rs55861543	-	C>T	565	20194	64.68	8.804e-16	0.7089
chr9:127267689	rs3814134	NR5A1	A>G	845	28361	64.59	9.22e-16	0.7536
chr9:117110112	Affx-52344420	AKNA	T>TG	367	14212	64.52	9.546e-16	0.6546
chr5:33955326	rs35390	SLC45A2	A>C	1250	39897	64.36	1.038e-15	0.7914
chr1:155178782	rs760077	THBS3	T>A	13431	352071	46.57	8.823e-12	0.9266
chr18:46453463	rs4939827	SMAD7	T>C	16271	422407	40.28	2.204e-10	0.9332
chr14:54414132	rs11623717	-	A>G	14852	356882	39.66	3.025e-10	1.072
chr8:117630683	rs16892766	-	A>C	3117	69995	37.98	7.129e-10	1.125
chr14:54410919	rs4444235	-	T>C	16919	409130	36.54	1.498e-09	1.068
chr6:32492866	rs111834747	HLA-DRB5	C>T	12586	301603	35.31	2.812e-09	1.07
chr6:32546879	Affx-28486470	HLA-DRB1	A>G	12836	307632	34.99	3.322e-09	1.069
chr6:32433167	rs2395185	-	G>T	12961	310711	34.24	4.884e-09	1.068
chr6:32432835	rs9268923	-	C>T	13108	314494	34.2	4.968e-09	1.068
chr15:33022090	rs35330276	GREM1	G>A	6998	164224	34.05	5.363e-09	1.083
chr6:32429643	rs9268853	-	T>C	13071	313490	34.01	5.471e-09	1.068
chr1:155151493	rs11264341	AL713999.1	C>T	15558	375430	33.79	6.154e-09	1.066
chr11:111171709	rs3802842	COLCA2	A>C	11181	266962	33.64	6.617e-09	1.07
chr6:32434349	rs9268969	-	C>T	13116	314962	33.54	6.987e-09	1.067
chr11:111165009	rs7103178	-	T>C	11204	267589	33.5	7.136e-09	1.07
chr6:32560934	rs28366302	-	G>C	12829	307869	33.31	7.869e-09	1.067
chr1:155162067	rs4072037	MUC1	T>C	15794	409099	33.15	8.523e-09	0.9391
chr6:32546557	rs34839759	HLA-DRB1	C>G	12743	305650	32.6	1.133e-08	1.067
chr6:32546696	rs3208409	HLA-DRB1	G>A	12783	306968	32.56	1.158e-08	1.067
chr11:111125512	rs2001754	C11orf53	A>G	12443	298737	32.25	1.354e-08	1.067

Associated Diseases ^ⓘ

ID	Name	Top Correlation
ICD: D126	Colon, unspecified	5/20
ICD: D128	Rectum	8/20
ICD: K317	Polyp of stomach and duodenum	10/20
ICD: M88	Paget's disease of bone [osteitis deformans]	2/20

ID	Name	Top Correlation
ICD-10: C189	Colon, unspecified	0/20
ICD-10: C211	Anal canal	0/20
ICD-10: C260	Intestinal tract, part unspecified	0/20
ICD-10: C781	Secondary malignant neoplasm of mediastinum	0/20
ICD-10: C796	Secondary malignant neoplasm of ovary	0/20
ICD-10: D132	Duodenum	0/20
ICD-10: D374	Colon	0/20
ICD-10: D375	Rectum	0/20
ICD-10: F430	Acute stress reaction	0/20
ICD-10: K500	Crohn's disease of small intestine	0/20
ICD-10: K550	Acute vascular disorders of intestine	0/20
ICD-10: K639	Disease of intestine, unspecified	0/20

Gastrointestinal carcinoma

0002672

Normal Case/Contol ⓘ

Sibling Case/Control ⓘ

Links

Statistics

Top SNP Information Show Normal Table Show Sibling SNP

Associated Diseases ⓘ Shared SNP diseases No shared SNP diseases

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Top SNP Information

Associated Diseases ^ⓘ