Case | Control |
---|---|
28464 | 431730 |
Enlargment (swelling) of a lymph node. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr23:64367019 | rs7064929 | - | G>A | 1384 | 16182 | 82.84 | 8.915e-20 | 1.294 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 1477 | 17900 | 67.18 | 2.477e-16 | 1.251 |
chr3:188327555 | rs7645635 | LPP | T>C | 1126 | 13250 | 65.73 | 5.176e-16 | 1.288 |
chr23:106146349 | rs5962774 | MORC4 | T>C | 891 | 10135 | 65.28 | 6.51e-16 | 1.328 |
chr12:56722060 | rs1918496 | PAN2 | G>T | 924 | 10693 | 60.94 | 5.883e-15 | 1.309 |
chr12:56755058 | rs4301822 | APOF | A>G | 994 | 11618 | 60.92 | 5.938e-15 | 1.296 |
chr12:56593900 | rs10876877 | - | A>G | 762 | 8597 | 60.49 | 7.392e-15 | 1.343 |
chr23:63423664 | rs5964740 | AMER1 | C>T | 1790 | 22310 | 60.28 | 8.221e-15 | 1.214 |
chr23:63410110 | rs61730681 | AMER1 | T>C | 1789 | 22344 | 58.92 | 1.638e-14 | 1.212 |
chr23:110685534 | rs16986503 | - | C>T | 984 | 11499 | 58.86 | 1.696e-14 | 1.293 |
chr10:114925758 | rs1056877 | TCF7L2 | T>C | 978 | 11473 | 58.25 | 2.309e-14 | 1.291 |
chr1:173579034 | rs12065033 | AL139142.2 | C>T | 1178 | 14163 | 57.25 | 3.847e-14 | 1.26 |
chr13:31074486 | rs7326905 | HMGB1 | G>A | 842 | 9767 | 54.63 | 1.453e-13 | 1.305 |
chr1:196552378 | rs28620995 | KCNT2 | G>A | 995 | 11793 | 54.6 | 1.478e-13 | 1.278 |
chr10:65924376 | rs4390238 | - | G>T | 929 | 10946 | 53.35 | 2.787e-13 | 1.285 |
chr9:117110112 | Affx-52344420 | AKNA | T>TG | 1117 | 13462 | 53.15 | 3.084e-13 | 1.257 |
chr23:142717383 | rs73577386 | SLITRK4 | A>G | 627 | 6995 | 52.68 | 3.917e-13 | 1.355 |
chr23:148151708 | Affx-34694529 | - | A>C | 716 | 8135 | 52.58 | 4.125e-13 | 1.328 |
chr6:137344363 | rs1744080 | IL20RA | G>A | 1255 | 15355 | 52.21 | 4.988e-13 | 1.239 |
chr9:129984107 | rs3739553 | RALGPS1 | G>A | 1172 | 14241 | 51.95 | 5.695e-13 | 1.247 |
chr8:72687743 | rs72657915 | - | G>A | 2631 | 44337 | 29.14 | 6.741e-08 | 0.895 |
chr5:167170953 | rs13436693 | TENM2 | A>C | 5958 | 84797 | 25.0 | 5.745e-07 | 1.073 |
chr8:72727958 | rs72657939 | - | G>T | 2364 | 39744 | 24.94 | 5.92e-07 | 0.8977 |
chr1:88741347 | rs115982800 | - | G>A | 2419 | 40582 | 24.26 | 8.425e-07 | 0.9 |
chr12:209354 | rs4980961 | IQSEC3 | C>T | 21685 | 320259 | 22.94 | 1.668e-06 | 1.044 |
chr8:14043880 | rs56040119 | SGCZ | G>T | 28481 | 423167 | 22.59 | 2.002e-06 | 1.042 |
chr12:58065448 | rs2640629 | - | T>C | 18492 | 288911 | 22.46 | 2.151e-06 | 0.9572 |
chr12:58018979 | rs1871417 | AC025165.6 | C>T | 17579 | 274761 | 21.99 | 2.741e-06 | 0.957 |
chr1:172675097 | rs12118303 | - | T>C | 9861 | 156290 | 21.66 | 3.26e-06 | 0.9482 |
chr9:30196533 | rs17774995 | - | T>C | 1668 | 22547 | 21.39 | 3.74e-06 | 1.126 |
chr12:3681824 | rs12427233 | PRMT8 | C>G | 8245 | 119108 | 21.24 | 4.059e-06 | 1.058 |
chr12:57985204 | rs11537654 | PIP4K2C | C>T | 14203 | 222921 | 21.21 | 4.114e-06 | 0.955 |
chr3:2848241 | rs7651788 | CNTN4 | T>G | 10301 | 149704 | 21.08 | 4.407e-06 | 1.053 |
chr6:90782278 | rs112516778 | BACH2 | C>T | 1456 | 24944 | 21.03 | 4.528e-06 | 0.8823 |
chr1:81728929 | rs77577587 | - | G>C | 1925 | 26291 | 20.38 | 6.362e-06 | 1.114 |
chr12:58017701 | rs7314152 | AC025165.6 | T>G | 17803 | 277652 | 20.09 | 7.386e-06 | 0.959 |
chr7:53212225 | rs4947784 | - | C>T | 12411 | 195265 | 19.86 | 8.328e-06 | 0.9544 |
chr9:78598961 | rs6560479 | PCSK5 | A>C | 18725 | 291867 | 19.86 | 8.338e-06 | 0.9597 |
chr12:58002599 | rs2306390 | DTX3 | C>T | 14164 | 222019 | 19.65 | 9.303e-06 | 0.9566 |
chr22:39629329 | rs11704525 | PDGFB | C>A | 27811 | 430056 | 19.56 | 9.764e-06 | 0.9624 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr1:169519049 | rs6025 | F5 | C>T | 1339 | 947 | 158.8 | 2.022e-36 | 0.5838 |
chr1:169491555 | rs2420371 | F5 | A>G | 3461 | 1857 | 78.09 | 9.86e-19 | 0.7686 |
chr1:169514006 | rs1018827 | F5 | G>A | 3502 | 1872 | 76.46 | 2.245e-18 | 0.7715 |
chr1:169477574 | rs6687813 | - | C>A | 3470 | 1852 | 74.75 | 5.334e-18 | 0.7728 |
chr1:169099137 | rs75112989 | ATP1B1 | G>A | 3333 | 1728 | 54.39 | 1.643e-13 | 0.7977 |
chr1:169428944 | rs1208134 | CCDC181 | T>C | 3276 | 1698 | 53.22 | 2.976e-13 | 0.7982 |
chr9:136142203 | rs514659 | ABO | A>C | 17741 | 8031 | 46.73 | 8.147e-12 | 0.8933 |
chr9:136149229 | rs505922 | ABO | T>C | 18348 | 8287 | 45.55 | 1.485e-11 | 0.8959 |
chr9:136143442 | rs612169 | ABO | A>G | 18430 | 8306 | 43.58 | 4.066e-11 | 0.8981 |
chr9:136142355 | rs643434 | ABO | G>A | 19627 | 8809 | 42.84 | 5.937e-11 | 0.9002 |
chr9:136149399 | rs507666 | ABO | G>A | 10679 | 4959 | 42.7 | 6.375e-11 | 0.8819 |
chr9:136154867 | rs495828 | - | G>T | 11990 | 5531 | 42.3 | 7.824e-11 | 0.8868 |
chr9:136137065 | rs687621 | ABO | A>G | 18407 | 8285 | 42.12 | 8.605e-11 | 0.8995 |
chr9:136155000 | rs635634 | - | C>T | 10614 | 4917 | 40.94 | 1.567e-10 | 0.8839 |
chr9:136139265 | rs657152 | ABO | C>A | 19571 | 8771 | 40.57 | 1.895e-10 | 0.9027 |
chr9:136132908 | rs8176719 | ABO | T>TC | 19574 | 8783 | 39.84 | 2.76e-10 | 0.9034 |
chr9:136153875 | rs651007 | - | C>T | 12025 | 5520 | 39.27 | 3.691e-10 | 0.8907 |
chr9:136154168 | rs579459 | - | T>C | 12031 | 5516 | 38.45 | 5.631e-10 | 0.8918 |
chr1:168889373 | rs78516619 | - | A>G | 706 | 413 | 29.21 | 6.489e-08 | 0.7147 |
chr6:30997078 | rs11753789 | MUC22 | T>C | 6487 | 2431 | 24.16 | 8.884e-07 | 1.132 |