Case | Control |
---|---|
113473 | 346721 |
Increased susceptibility to infections. [HPO:probinson, HPO:skoehler]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 17136 | 46157 | 202.2 | 6.877e-46 | 1.141 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 16468 | 44624 | 175.8 | 4.09e-40 | 1.133 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 16669 | 45292 | 170.2 | 6.812e-39 | 1.13 |
chr6:396321 | rs12203592 | IRF4 | C>T | 50996 | 150209 | 53.96 | 2.042e-13 | 1.043 |
chr2:44185713 | rs17031779 | LRPPRC | T>C | 6334 | 17598 | 40.34 | 2.13e-10 | 1.099 |
chr2:44788309 | rs72790077 | CAMKMT | C>G | 4529 | 12393 | 39.08 | 4.067e-10 | 1.116 |
chr6:421281 | rs62389423 | - | G>A | 41529 | 122507 | 38.36 | 5.895e-10 | 1.039 |
chr19:49211969 | rs676388 | - | C>T | 112985 | 349297 | 36.08 | 1.897e-09 | 0.9721 |
chr19:49206172 | rs516246 | FUT2 | T>C | 119142 | 367851 | 34.08 | 5.29e-09 | 0.973 |
chr19:49206417 | rs492602 | FUT2 | G>A | 118918 | 367268 | 34.0 | 5.514e-09 | 0.973 |
chr19:49206674 | rs601338 | FUT2 | A>G | 118789 | 366771 | 33.4 | 7.512e-09 | 0.9732 |
chr19:49206462 | rs681343 | FUT2 | T>C | 118938 | 367216 | 32.6 | 1.131e-08 | 0.9735 |
chr19:49209010 | rs503279 | FUT2 | C>T | 112575 | 347793 | 32.52 | 1.178e-08 | 0.9735 |
chr1:201860626 | rs2250377 | SHISA4 | G>A | 80636 | 241091 | 32.03 | 1.519e-08 | 1.029 |
chr19:49206985 | rs602662 | FUT2 | A>G | 112541 | 347671 | 31.96 | 1.573e-08 | 0.9737 |
chr19:49208865 | rs504963 | FUT2 | A>G | 112984 | 348941 | 31.89 | 1.629e-08 | 0.9738 |
chr19:49207206 | rs485186 | FUT2 | G>A | 112481 | 347385 | 31.81 | 1.704e-08 | 0.9738 |
chr19:49228272 | rs2287921 | RASIP1 | C>T | 114353 | 353041 | 31.03 | 2.536e-08 | 0.9742 |
chr19:49214470 | rs281380 | - | T>C | 85654 | 265426 | 30.94 | 2.661e-08 | 0.9731 |
chr1:201869257 | rs2820312 | LMOD1 | G>A | 81199 | 242859 | 30.56 | 3.233e-08 | 1.028 |
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 16398 | 44204 | 201.4 | 1.036e-45 | 1.144 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 15670 | 42438 | 178.2 | 1.176e-40 | 1.138 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 15691 | 42599 | 171.6 | 3.333e-39 | 1.135 |
chr6:396321 | rs12203592 | IRF4 | C>T | 50390 | 148525 | 62.52 | 2.633e-15 | 1.047 |
chr6:421281 | rs62389423 | - | G>A | 40974 | 120891 | 45.66 | 1.406e-11 | 1.044 |
chr2:136594158 | rs2236783 | LCT | A>G | 46679 | 146989 | 41.04 | 1.488e-10 | 0.9625 |
chr2:136643555 | rs309125 | - | C>T | 48550 | 152744 | 40.33 | 2.141e-10 | 0.9633 |
chr2:44788309 | rs72790077 | CAMKMT | C>G | 4436 | 12148 | 40.17 | 2.326e-10 | 1.119 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 53744 | 168716 | 38.93 | 4.384e-10 | 0.9652 |
chr2:44185713 | rs17031779 | LRPPRC | T>C | 5998 | 16739 | 37.28 | 1.022e-09 | 1.098 |
chr2:44074431 | rs4245791 | ABCG8 | T>C | 72427 | 225914 | 34.93 | 3.413e-09 | 0.9698 |
chr4:151206319 | rs6817154 | LRBA | T>C | 72896 | 218162 | 34.53 | 4.203e-09 | 1.031 |
chr2:44073881 | rs6544713 | ABCG8 | C>T | 71714 | 223730 | 34.39 | 4.501e-09 | 0.97 |
chr4:151199080 | rs2290846 | LRBA | G>A | 66152 | 197710 | 34.14 | 5.13e-09 | 1.032 |
chr4:151207127 | rs3749574 | LRBA | C>T | 72889 | 218205 | 34.07 | 5.322e-09 | 1.031 |
chr19:49211969 | rs676388 | - | C>T | 104449 | 323794 | 31.1 | 2.454e-08 | 0.9733 |
chr2:136555659 | rs2322659 | LCT | C>T | 43455 | 136487 | 31.01 | 2.563e-08 | 0.9664 |
chr4:151148930 | rs28405622 | DCLK2 | C>T | 70091 | 209744 | 30.94 | 2.658e-08 | 1.03 |
chr6:26198046 | rs4145878 | AL031777.2 | T>A | 104077 | 322642 | 30.29 | 3.715e-08 | 0.9736 |
chr19:49206674 | rs601338 | FUT2 | A>G | 110119 | 341000 | 29.42 | 5.815e-08 | 0.9741 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr9:37735123 | rs10814614 | AL138752.2 | A>G | 30034 | 1873 | 23.13 | 1.516e-06 | 1.13 |
chr4:189977180 | rs114977593 | - | C>T | 2478 | 236 | 21.97 | 2.767e-06 | 0.7259 |
chr23:9362962 | rs60102760 | - | T>G | 5388 | 457 | 20.66 | 5.481e-06 | 0.7983 |
chr6:68259307 | rs34754384 | - | A>C | 4167 | 367 | 19.47 | 1.02e-05 | 0.7847 |
chr20:43343834 | rs34077853 | CCN5 | T>C | 16154 | 976 | 19.05 | 1.275e-05 | 1.16 |
chr8:5471647 | rs117304430 | - | C>A | 2885 | 264 | 18.82 | 1.433e-05 | 0.7555 |
chr11:128902752 | rs12804686 | ARHGAP32 | G>A | 8825 | 722 | 18.75 | 1.491e-05 | 0.8425 |
chr11:62194412 | rs2509957 | - | A>C | 54965 | 4047 | 18.3 | 1.887e-05 | 0.9221 |
chr2:12415960 | rs80051594 | - | T>C | 8423 | 690 | 18.28 | 1.905e-05 | 0.8412 |
chr4:55964565 | rs3816584 | KDR | A>G | 53740 | 3974 | 18.24 | 1.947e-05 | 0.922 |
chr4:55962545 | rs3214870 | KDR | T>TG | 54546 | 4024 | 18.16 | 2.026e-05 | 0.9225 |
chr12:112963146 | rs11615234 | - | G>A | 47963 | 3553 | 18.16 | 2.036e-05 | 0.9193 |
chr3:38584845 | rs114549077 | - | A>G | 10584 | 852 | 18.14 | 2.05e-05 | 0.8558 |
chr10:129739485 | rs79224041 | PTPRE | G>A | 7009 | 392 | 18.04 | 2.162e-05 | 1.25 |
chr15:40360741 | rs7181230 | - | A>G | 78121 | 5681 | 18.03 | 2.179e-05 | 0.9296 |
chr17:2778898 | rs9898939 | RAP1GAP2 | T>C | 48683 | 3151 | 18.03 | 2.177e-05 | 1.091 |
chr15:40380818 | rs1540686 | BMF | A>G | 101381 | 6762 | 17.94 | 2.277e-05 | 1.073 |
chr7:36799721 | rs12538037 | - | T>C | 47908 | 3103 | 17.77 | 2.491e-05 | 1.091 |
chr9:114690711 | rs181289794 | UGCG | A>G | 4718 | 406 | 17.76 | 2.506e-05 | 0.8022 |
chr12:77630237 | rs117599658 | - | A>G | 4459 | 386 | 17.69 | 2.601e-05 | 0.7982 |