Case | Control |
---|---|
24985 | 435209 |
An anomaly of the rhythm or depth of breathing. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 1246 | 26280 | 45.0 | 1.969e-11 | 0.8216 |
chr16:80411204 | rs79700617 | - | C>G | 393 | 9447 | 39.69 | 2.97e-10 | 0.7231 |
chr15:48392165 | rs1834640 | - | A>G | 1478 | 30146 | 36.36 | 1.639e-09 | 0.8498 |
chr19:18820308 | rs757318 | CRTC1 | C>A | 25271 | 452452 | 34.24 | 4.883e-09 | 0.949 |
chr25:2679949 | rs311121 | - | G>T | 7153 | 133050 | 33.82 | 6.051e-09 | 0.9269 |
chr4:128310182 | rs6534618 | - | G>A | 798 | 17108 | 33.69 | 6.469e-09 | 0.8094 |
chr13:113979968 | rs200506581 | GRTP1 | C>CCACA | 546 | 12180 | 32.63 | 1.117e-08 | 0.7784 |
chr10:45243171 | rs10900107 | - | T>C | 1145 | 23600 | 32.33 | 1.299e-08 | 0.8405 |
chr2:135911422 | Affx-17900027 | RAB3GAP1 | T>C | 12522 | 228084 | 31.45 | 2.048e-08 | 0.9428 |
chr3:124307861 | rs2651618 | KALRN | T>C | 589 | 12915 | 30.35 | 3.601e-08 | 0.7922 |
chr18:40401519 | rs57372542 | RIT2 | C>T | 743 | 15880 | 30.25 | 3.805e-08 | 0.8126 |
chr13:113979972 | Affx-80297025 | GRTP1 | A>ACACT | 551 | 12156 | 29.9 | 4.557e-08 | 0.7875 |
chr19:18829770 | rs11668587 | CRTC1 | A>G | 17231 | 310661 | 29.66 | 5.143e-08 | 0.9494 |
chr22:23125050 | rs12159531 | - | C>T | 690 | 14787 | 28.87 | 7.751e-08 | 0.8104 |
chr4:140631947 | rs4863677 | MGST2 | G>T | 954 | 19799 | 28.67 | 8.573e-08 | 0.8362 |
chr22:23120695 | rs73162949 | - | C>T | 738 | 15688 | 28.65 | 8.681e-08 | 0.8165 |
chr5:106908138 | rs163961 | EFNA5 | A>C | 1454 | 29114 | 27.88 | 1.293e-07 | 0.866 |
chr25:155053713 | rs28884873 | - | G>A | 8475 | 140000 | 27.71 | 1.412e-07 | 1.066 |
chr24:14850341 | rs2032598 | USP9Y | T>C | 127 | 2685 | 27.35 | 1.698e-07 | 0.6234 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 13943 | 252455 | 27.2 | 1.837e-07 | 0.9485 |
chr25:154999134 | rs6642320 | - | G>A | 16996 | 306367 | 32.96 | 9.427e-09 | 0.9449 |
chr25:155053713 | rs28884873 | - | G>A | 8069 | 132980 | 28.98 | 7.301e-08 | 1.07 |
chr15:97945780 | rs28435176 | - | T>G | 1586 | 24139 | 27.83 | 1.323e-07 | 1.149 |
chr25:2679949 | rs311121 | - | G>T | 6708 | 124080 | 26.34 | 2.868e-07 | 0.9332 |
chr12:94188781 | rs73222727 | CRADD | T>G | 2927 | 46398 | 25.78 | 3.829e-07 | 1.105 |
chr12:16958019 | rs10846431 | - | A>G | 18732 | 336356 | 25.39 | 4.683e-07 | 0.9532 |
chr4:40204050 | rs73808637 | RHOH | T>C | 831 | 12103 | 25.23 | 5.101e-07 | 1.199 |
chr6:126964510 | rs4273712 | - | A>G | 12837 | 232279 | 23.87 | 1.033e-06 | 0.9499 |
chr9:7769009 | rs2381661 | - | A>G | 12012 | 217632 | 23.73 | 1.108e-06 | 0.9489 |
chr18:28741950 | rs17800369 | DSC1 | A>C | 3575 | 57486 | 23.42 | 1.304e-06 | 1.09 |
chr20:31340356 | rs6141803 | - | T>C | 8834 | 146557 | 23.42 | 1.301e-06 | 1.06 |
chr19:18829770 | rs11668587 | CRTC1 | A>G | 16147 | 290227 | 22.75 | 1.846e-06 | 0.9542 |
chr25:154986418 | rs142918084 | - | C>G | 1475 | 29226 | 22.55 | 2.048e-06 | 0.8792 |
chr2:76413305 | rs72822798 | - | G>T | 8526 | 155842 | 22.44 | 2.165e-06 | 0.9436 |
chr2:135911422 | Affx-17900027 | RAB3GAP1 | T>C | 10350 | 188068 | 22.21 | 2.445e-06 | 0.948 |
chr6:126851160 | rs1490384 | - | T>C | 25442 | 433596 | 21.92 | 2.848e-06 | 1.044 |
chr2:135837906 | rs7570971 | RAB3GAP1 | C>A | 13552 | 244334 | 21.76 | 3.09e-06 | 0.9529 |
chr25:155183483 | rs73237015 | - | G>A | 8832 | 161110 | 21.75 | 3.101e-06 | 0.9453 |
chr12:73937446 | rs116970416 | - | C>T | 678 | 9826 | 21.72 | 3.162e-06 | 1.204 |
chr3:44004468 | rs13081767 | - | T>C | 11646 | 210701 | 21.69 | 3.204e-06 | 0.9506 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr17:70147870 | rs16977110 | - | T>C | 1201 | 5449 | 30.65 | 3.093e-08 | 0.8366 |
chr25:154986418 | rs142918084 | - | C>G | 1587 | 7026 | 29.41 | 5.867e-08 | 0.8579 |
chr15:28388274 | rs56013620 | HERC2 | G>A | 422 | 2141 | 29.29 | 6.235e-08 | 0.7494 |
chr17:9422686 | rs12453113 | STX8 | A>T | 9046 | 36495 | 28.49 | 9.412e-08 | 0.9333 |
chr20:31340356 | rs6141803 | - | T>C | 9369 | 33859 | 25.7 | 3.99e-07 | 1.068 |
chr4:176575077 | rs4624612 | GPM6A | T>C | 1763 | 7642 | 24.64 | 6.915e-07 | 0.8752 |
chr25:2679949 | rs311121 | - | G>T | 7153 | 28980 | 24.34 | 8.073e-07 | 0.9323 |
chr19:29501786 | rs12973370 | - | A>G | 11446 | 45659 | 24.23 | 8.548e-07 | 0.9435 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 1246 | 5530 | 24.08 | 9.256e-07 | 0.8559 |
chr17:72978048 | rs113735659 | - | T>G | 533 | 2558 | 23.65 | 1.158e-06 | 0.7927 |
chr10:79785825 | rs3758464 | POLR3A | T>G | 503 | 2427 | 23.4 | 1.319e-06 | 0.7885 |
chr16:80411204 | rs79700617 | - | C>G | 393 | 1955 | 23.37 | 1.339e-06 | 0.7653 |
chr4:128310182 | rs6534618 | - | G>A | 798 | 3665 | 23.16 | 1.491e-06 | 0.8276 |
chr7:98585152 | rs219818 | TRRAP | G>T | 792 | 3639 | 23.07 | 1.56e-06 | 0.8273 |
chr1:245532053 | rs12091805 | KIF26B | T>G | 2253 | 9585 | 23.0 | 1.617e-06 | 0.8916 |
chr8:125606229 | rs4007926 | MTSS1 | G>A | 22546 | 83639 | 22.88 | 1.728e-06 | 1.048 |
chr19:18829770 | rs11668587 | CRTC1 | A>G | 17231 | 67887 | 22.23 | 2.42e-06 | 0.9521 |
chr25:154999134 | rs6642320 | - | G>A | 18225 | 71710 | 22.03 | 2.677e-06 | 0.9522 |
chr1:245520118 | rs4256853 | KIF26B | T>C | 1070 | 4771 | 21.97 | 2.771e-06 | 0.8521 |
chr14:30973592 | rs117749188 | - | A>G | 1229 | 4033 | 21.7 | 3.188e-06 | 1.166 |
chr25:154999134 | rs6642320 | - | G>A | 16996 | 67223 | 29.32 | 6.143e-08 | 0.9434 |
chr25:154986418 | rs142918084 | - | C>G | 1475 | 6538 | 27.91 | 1.271e-07 | 0.8566 |
chr20:31340356 | rs6141803 | - | T>C | 8834 | 31904 | 24.23 | 8.557e-07 | 1.068 |
chr25:155053713 | rs28884873 | - | G>A | 8069 | 29136 | 22.44 | 2.167e-06 | 1.067 |
chr19:29501786 | rs12973370 | - | A>G | 10437 | 41610 | 22.08 | 2.616e-06 | 0.9437 |
chr17:9422686 | rs12453113 | STX8 | A>T | 8301 | 33264 | 21.08 | 4.414e-06 | 0.9401 |
chr15:97945780 | rs28435176 | - | T>G | 1586 | 5310 | 20.97 | 4.666e-06 | 1.142 |
chr23:24939664 | rs146234888 | POLA1 | C>T | 1159 | 4172 | 20.93 | 4.758e-06 | 1.167 |
chr4:178019148 | rs6846031 | - | G>T | 24248 | 90302 | 20.59 | 5.683e-06 | 1.047 |
chr1:54484482 | rs914720 | - | C>T | 20914 | 77524 | 20.41 | 6.251e-06 | 1.047 |
chr25:2685254 | rs311142 | - | C>T | 19937 | 73897 | 20.27 | 6.736e-06 | 1.047 |
chr7:9543075 | rs2464920 | - | A>G | 18962 | 70159 | 20.12 | 7.274e-06 | 1.048 |
chr20:52771261 | rs2762934 | CYP24A1 | G>A | 8504 | 34009 | 19.99 | 7.791e-06 | 0.9422 |
chr12:94188781 | rs73222727 | CRADD | T>G | 2927 | 10180 | 19.86 | 8.345e-06 | 1.101 |
chr9:5365761 | rs968840 | PLGRKT | T>A | 15540 | 61370 | 19.45 | 1.034e-05 | 0.9524 |
chr14:30973592 | rs117749188 | - | A>G | 1201 | 3966 | 19.29 | 1.124e-05 | 1.157 |
chr20:31448849 | rs6120005 | EFCAB8 | G>A | 8363 | 30330 | 19.02 | 1.291e-05 | 1.061 |
chr18:54397622 | rs17750015 | WDR7 | T>C | 17812 | 69853 | 18.99 | 1.315e-05 | 0.9553 |
chr25:2679949 | rs311121 | - | G>T | 6708 | 27008 | 18.96 | 1.333e-05 | 0.9381 |
chr8:129122576 | rs2608035 | - | G>A | 1657 | 5599 | 18.95 | 1.34e-05 | 1.132 |
ID | Name | Top Correlation |
---|---|---|
ICD: K227 | Barrett's oesophagus | 2/20 |