Case | Control |
---|---|
120168 | 340026 |
This category describes not-primarily structural lesions.
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 51627 | 138636 | 125.9 | 3.204e-29 | 1.067 |
chr6:32582650 | rs3104413 | - | C>G | 48612 | 130457 | 119.7 | 7.236e-28 | 1.067 |
chr6:32577973 | rs532965 | - | T>G | 49003 | 131534 | 117.8 | 1.943e-27 | 1.066 |
chr6:32583357 | rs6931277 | - | A>T | 47979 | 128713 | 116.5 | 3.725e-27 | 1.066 |
chr6:32577380 | rs660895 | - | A>G | 55030 | 148617 | 104.3 | 1.721e-24 | 1.059 |
chr6:32581973 | rs521539 | - | G>A | 55037 | 148760 | 101.0 | 8.999e-24 | 1.058 |
chr6:32303848 | rs28361060 | TSBP1 | G>A | 57625 | 156235 | 93.41 | 4.254e-22 | 1.055 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 57532 | 156068 | 90.51 | 1.839e-21 | 1.054 |
chr6:32387809 | rs2395163 | - | T>C | 57311 | 155472 | 89.97 | 2.418e-21 | 1.054 |
chr6:32333341 | rs9268362 | TSBP1 | A>G | 57739 | 156672 | 89.81 | 2.627e-21 | 1.054 |
chr6:32379295 | rs9268515 | - | G>C | 48730 | 131640 | 88.39 | 5.365e-21 | 1.057 |
chr6:32402778 | rs9268614 | - | T>G | 58263 | 158195 | 88.25 | 5.781e-21 | 1.053 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 57499 | 156129 | 86.4 | 1.467e-20 | 1.053 |
chr6:32625869 | Affx-28496566 | - | C>T | 94423 | 273539 | 77.14 | 1.591e-18 | 0.9585 |
chr6:32371915 | rs3793127 | BTNL2 | C>T | 57305 | 156059 | 73.29 | 1.122e-17 | 1.049 |
chr6:32375973 | rs3763309 | - | C>A | 57215 | 155866 | 72.67 | 1.535e-17 | 1.048 |
chr6:32428062 | rs9268833 | - | C>T | 81652 | 224145 | 72.62 | 1.57e-17 | 1.043 |
chr6:32620399 | rs17843606 | - | T>G | 96429 | 279450 | 71.19 | 3.238e-17 | 0.9605 |
chr6:32428115 | rs9268835 | - | G>A | 81609 | 224105 | 70.99 | 3.592e-17 | 1.043 |
chr6:32376348 | rs3763312 | - | G>A | 56886 | 154989 | 70.96 | 3.647e-17 | 1.048 |
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 49819 | 133471 | 139.3 | 3.839e-32 | 1.072 |
chr6:32582650 | rs3104413 | - | C>G | 47067 | 126127 | 128.8 | 7.637e-30 | 1.071 |
chr6:32577973 | rs532965 | - | T>G | 47451 | 127216 | 125.6 | 3.67e-29 | 1.07 |
chr6:32583357 | rs6931277 | - | A>T | 46472 | 124484 | 125.0 | 5.14e-29 | 1.07 |
chr6:32577380 | rs660895 | - | A>G | 52788 | 142179 | 118.9 | 1.082e-27 | 1.065 |
chr6:32581973 | rs521539 | - | G>A | 52791 | 142304 | 115.4 | 6.359e-27 | 1.064 |
chr6:32303848 | rs28361060 | TSBP1 | G>A | 56359 | 152878 | 95.44 | 1.523e-22 | 1.056 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 56265 | 152715 | 92.42 | 7.025e-22 | 1.056 |
chr6:32333341 | rs9268362 | TSBP1 | A>G | 56471 | 153311 | 91.78 | 9.689e-22 | 1.055 |
chr6:32379295 | rs9268515 | - | G>C | 47597 | 128589 | 91.47 | 1.132e-21 | 1.059 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 56228 | 152767 | 88.3 | 5.63e-21 | 1.054 |
chr6:32387809 | rs2395163 | - | T>C | 54859 | 148970 | 87.5 | 8.407e-21 | 1.055 |
chr6:32402778 | rs9268614 | - | T>G | 55706 | 151413 | 85.34 | 2.518e-20 | 1.054 |
chr6:32428062 | rs9268833 | - | C>T | 78032 | 214083 | 78.85 | 6.712e-19 | 1.046 |
chr6:32428115 | rs9268835 | - | G>A | 77990 | 214044 | 77.24 | 1.517e-18 | 1.046 |
chr6:32371915 | rs3793127 | BTNL2 | C>T | 54953 | 149701 | 74.02 | 7.715e-18 | 1.05 |
chr6:32375973 | rs3763309 | - | C>A | 54866 | 149521 | 73.32 | 1.101e-17 | 1.05 |
chr6:32625869 | Affx-28496566 | - | C>T | 87905 | 255011 | 73.31 | 1.108e-17 | 0.9583 |
chr6:32376348 | rs3763312 | - | G>A | 54559 | 148689 | 72.18 | 1.961e-17 | 1.05 |
chr6:32620399 | rs17843606 | - | T>G | 89736 | 260604 | 69.98 | 5.982e-17 | 0.9596 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:32607376 | rs34250758 | HLA-DQA1 | G>A | 49819 | 24960 | 59.28 | 1.365e-14 | 1.069 |
chr6:32582650 | rs3104413 | - | C>G | 47067 | 23545 | 57.15 | 4.04e-14 | 1.069 |
chr6:32577973 | rs532965 | - | T>G | 47451 | 23748 | 55.5 | 9.361e-14 | 1.068 |
chr6:32583357 | rs6931277 | - | A>T | 46472 | 23253 | 53.92 | 2.091e-13 | 1.068 |
chr6:32577380 | rs660895 | - | A>G | 52788 | 26560 | 51.27 | 8.063e-13 | 1.063 |
chr6:32581973 | rs521539 | - | G>A | 52791 | 26583 | 49.41 | 2.077e-12 | 1.061 |
chr6:32379295 | rs9268515 | - | G>C | 47597 | 23929 | 46.48 | 9.243e-12 | 1.062 |
chr6:32303848 | rs28361060 | TSBP1 | G>A | 56359 | 28587 | 38.59 | 5.222e-10 | 1.053 |
chr6:32387809 | rs2395163 | - | T>C | 54859 | 27824 | 37.46 | 9.337e-10 | 1.052 |
chr6:32282854 | rs6910071 | TSBP1 | A>G | 56265 | 28570 | 36.57 | 1.469e-09 | 1.051 |
chr6:32625869 | Affx-28496566 | - | C>T | 87905 | 47601 | 36.41 | 1.601e-09 | 0.9571 |
chr6:32620399 | rs17843606 | - | T>G | 89736 | 48677 | 36.38 | 1.621e-09 | 0.9576 |
chr6:32333341 | rs9268362 | TSBP1 | A>G | 56471 | 28680 | 35.97 | 2.006e-09 | 1.051 |
chr6:32402778 | rs9268614 | - | T>G | 55706 | 28297 | 35.52 | 2.528e-09 | 1.051 |
chr6:32257284 | rs9268145 | TSBP1 | T>G | 56228 | 28578 | 35.35 | 2.749e-09 | 1.05 |
chr6:32376348 | rs3763312 | - | G>A | 54559 | 27708 | 34.74 | 3.768e-09 | 1.051 |
chr6:32613712 | rs9273215 | HLA-DQA1 | A>G | 92111 | 49878 | 34.51 | 4.249e-09 | 0.959 |
chr6:32428062 | rs9268833 | - | C>T | 78032 | 39958 | 34.35 | 4.614e-09 | 1.045 |
chr6:32371915 | rs3793127 | BTNL2 | C>T | 54953 | 27917 | 34.26 | 4.823e-09 | 1.05 |
chr6:32620775 | rs17843619 | - | A>C | 91807 | 49719 | 34.2 | 4.966e-09 | 0.9592 |