Case | Control |
---|---|
130529 | 329665 |
Any abnormality of bones of the arms or legs. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 6346 | 21180 | 364.2 | 3.344e-81 | 0.759 |
chr15:48392165 | rs1834640 | - | A>G | 7552 | 24072 | 295.4 | 3.237e-66 | 0.7948 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 16979 | 50079 | 285.6 | 4.547e-64 | 0.8564 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 14369 | 42623 | 258.9 | 3.009e-58 | 0.8526 |
chr6:170242949 | rs9396958 | - | T>C | 3685 | 12429 | 226.2 | 3.978e-51 | 0.7533 |
chr2:211717706 | rs12995612 | - | C>G | 3801 | 12671 | 213.7 | 2.092e-48 | 0.7622 |
chr20:2315543 | rs6132532 | AL121899.2 | A>G | 12613 | 36921 | 186.6 | 1.741e-42 | 0.8657 |
chr1:236085940 | rs12038310 | - | C>T | 3550 | 11726 | 185.5 | 3.016e-42 | 0.7695 |
chr2:235130071 | rs10177096 | - | A>G | 5108 | 16142 | 182.0 | 1.815e-41 | 0.8039 |
chr6:22050187 | rs1736507 | - | C>A | 3375 | 11138 | 175.6 | 4.473e-40 | 0.77 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 23668 | 66440 | 173.7 | 1.147e-39 | 0.9008 |
chr1:200197167 | rs12029277 | - | T>C | 3045 | 10167 | 172.6 | 1.99e-39 | 0.7617 |
chr10:108672251 | rs1572457 | SORCS1 | C>T | 2666 | 9052 | 171.0 | 4.395e-39 | 0.7492 |
chr15:73142636 | rs4777559 | - | C>T | 3506 | 11480 | 170.7 | 5.325e-39 | 0.7763 |
chr13:72441665 | rs3759505 | - | C>T | 3955 | 12760 | 169.5 | 9.478e-39 | 0.788 |
chr1:29783282 | rs6676357 | - | T>C | 2254 | 7800 | 165.2 | 8.259e-38 | 0.7352 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 3972 | 12768 | 164.9 | 9.507e-38 | 0.7909 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 3382 | 11081 | 164.8 | 1.014e-37 | 0.7763 |
chr13:72463541 | rs1460465 | - | A>G | 3812 | 12312 | 164.8 | 1.03e-37 | 0.7873 |
chr4:134694407 | rs6845289 | - | G>A | 2757 | 9263 | 163.8 | 1.663e-37 | 0.7571 |
chr1:174736877 | rs1653636 | RABGAP1L | C>T | 72589 | 188299 | 52.7 | 3.894e-13 | 0.9633 |
chr3:49899795 | rs3796386 | CAMKV | G>A | 112519 | 278842 | 50.12 | 1.445e-12 | 1.034 |
chr3:50070763 | rs7621352 | RBM6 | A>C | 120466 | 309583 | 49.87 | 1.64e-12 | 0.9678 |
chr3:50108792 | rs3774734 | RBM6 | A>C | 117614 | 291805 | 48.64 | 3.082e-12 | 1.033 |
chr3:50153356 | rs1138536 | RBM5 | C>T | 115237 | 285797 | 47.8 | 4.729e-12 | 1.033 |
chr3:50144951 | rs1061474 | RBM5 | C>T | 115174 | 285722 | 45.97 | 1.2e-11 | 1.032 |
chr3:49902544 | rs9821675 | CAMKV | A>G | 132739 | 330111 | 45.52 | 1.512e-11 | 1.032 |
chr3:49949071 | rs868891 | MON1A | A>G | 113421 | 281437 | 45.38 | 1.62e-11 | 1.032 |
chr3:50129399 | Affx-22412948 | RBM6 | C>T | 122961 | 315661 | 45.21 | 1.768e-11 | 0.9693 |
chr3:49924940 | rs1062633 | MST1R | C>T | 124023 | 318236 | 44.83 | 2.149e-11 | 0.9694 |
chr3:49936102 | rs2230590 | MST1R | C>T | 124573 | 319702 | 44.46 | 2.592e-11 | 0.9696 |
chr3:50174848 | rs7642934 | - | G>A | 122326 | 314095 | 44.2 | 2.958e-11 | 0.9696 |
chr4:103188709 | rs13107325 | SLC39A8 | C>T | 20288 | 48576 | 43.98 | 3.314e-11 | 1.059 |
chr11:28643913 | rs10835372 | - | T>C | 95666 | 246349 | 41.93 | 9.463e-11 | 0.9694 |
chr1:174610458 | rs2760058 | RABGAP1L | C>T | 63302 | 164046 | 41.0 | 1.525e-10 | 0.9661 |
chr1:174737543 | rs72715300 | RABGAP1L | A>G | 64352 | 166743 | 40.77 | 1.708e-10 | 0.9664 |
chr1:174371209 | rs16846949 | RABGAP1L | A>G | 62379 | 161677 | 40.31 | 2.165e-10 | 0.9662 |
chr1:174516999 | rs41266050 | RABGAP1L | C>T | 62777 | 162665 | 39.71 | 2.948e-10 | 0.9666 |
chr3:50187790 | rs2526397 | - | G>T | 92404 | 228862 | 39.36 | 3.522e-10 | 1.031 |
chr3:50062878 | rs13071931 | RBM6 | G>A | 67168 | 165519 | 38.99 | 4.269e-10 | 1.034 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr16:309950 | rs78641696 | FAM234A | C>T | 5888 | 424 | 24.73 | 6.586e-07 | 0.7764 |
chr4:170721853 | rs79501185 | - | C>T | 9676 | 659 | 23.49 | 1.255e-06 | 0.8193 |
chr5:165377699 | rs9313296 | - | G>C | 6403 | 451 | 21.84 | 2.957e-06 | 0.7939 |
chr19:56348118 | rs430219 | NLRP11 | C>T | 41618 | 2135 | 20.75 | 5.233e-06 | 1.116 |
chr17:70037793 | rs12603032 | - | G>T | 107194 | 5758 | 19.53 | 9.891e-06 | 1.08 |
chr2:174163505 | rs57630181 | - | G>C | 27484 | 1714 | 19.03 | 1.285e-05 | 0.8909 |
chr13:50910525 | rs2812212 | - | A>G | 118606 | 6402 | 18.72 | 1.51e-05 | 1.077 |
chr1:92150058 | rs913060 | TGFBR3 | G>A | 105048 | 6174 | 18.67 | 1.552e-05 | 0.9284 |
chr1:33949843 | rs116563715 | ZSCAN20 | G>A | 7757 | 528 | 18.59 | 1.62e-05 | 0.8211 |
chr3:120555690 | rs17185597 | - | T>C | 59630 | 3580 | 18.57 | 1.634e-05 | 0.9183 |
chr19:56348635 | rs302468 | NLRP4 | A>G | 49670 | 2583 | 18.47 | 1.73e-05 | 1.101 |
chr19:56358208 | rs450838 | NLRP4 | G>C | 57402 | 3008 | 18.33 | 1.859e-05 | 1.094 |
chr12:11089355 | rs3851583 | PRH1 | A>G | 66599 | 3980 | 18.31 | 1.876e-05 | 0.9215 |
chr13:50920173 | rs2812213 | - | G>A | 124218 | 7252 | 18.31 | 1.878e-05 | 0.9299 |
chr4:190716493 | rs72720711 | - | C>T | 15337 | 988 | 18.29 | 1.902e-05 | 0.8649 |
chr3:98723897 | rs2470815 | - | G>A | 91877 | 5422 | 18.06 | 2.141e-05 | 0.9279 |
chr11:124974588 | rs56348411 | TMEM218 | C>T | 61628 | 3694 | 18.04 | 2.168e-05 | 0.9202 |
chr5:39439911 | rs76751490 | DAB2 | A>G | 12186 | 798 | 18.01 | 2.193e-05 | 0.8527 |
chr1:160206394 | rs9633341 | DCAF8 | A>G | 125225 | 6784 | 17.91 | 2.312e-05 | 1.075 |
chr19:30656451 | rs73015690 | - | C>T | 5761 | 248 | 17.59 | 2.736e-05 | 1.315 |