Case | Control |
---|---|
106422 | 353772 |
An abnormality of the arm. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 5079 | 22447 | 322.9 | 3.446e-72 | 0.7545 |
chr15:48392165 | rs1834640 | - | A>G | 6055 | 25569 | 266.2 | 7.57e-60 | 0.7897 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 13679 | 53379 | 263.4 | 3.131e-59 | 0.8517 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 11593 | 45399 | 231.1 | 3.379e-52 | 0.8501 |
chr2:235130071 | rs10177096 | - | A>G | 4092 | 17158 | 166.6 | 4.018e-38 | 0.7975 |
chr6:170242949 | rs9396958 | - | T>C | 3021 | 13093 | 162.9 | 2.672e-37 | 0.772 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 2683 | 11780 | 159.8 | 1.261e-36 | 0.7624 |
chr1:236085940 | rs12038310 | - | C>T | 2860 | 12416 | 156.2 | 7.746e-36 | 0.7709 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 19169 | 70939 | 154.8 | 1.531e-35 | 0.8994 |
chr15:73142636 | rs4777559 | - | C>T | 2811 | 12175 | 150.8 | 1.173e-34 | 0.7726 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 3182 | 13558 | 148.9 | 3.015e-34 | 0.7854 |
chr2:211717706 | rs12995612 | - | C>G | 3130 | 13342 | 147.3 | 6.843e-34 | 0.7849 |
chr6:22050187 | rs1736507 | - | C>A | 2725 | 11788 | 145.6 | 1.554e-33 | 0.773 |
chr5:54280007 | rs1508890 | ESM1 | C>A | 3544 | 14872 | 145.3 | 1.843e-33 | 0.7971 |
chr10:108672251 | rs1572457 | SORCS1 | C>T | 2144 | 9574 | 144.6 | 2.683e-33 | 0.7499 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 8436 | 32711 | 144.4 | 2.84e-33 | 0.8611 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 4296 | 17647 | 143.7 | 4.149e-33 | 0.8141 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 8404 | 32576 | 143.5 | 4.607e-33 | 0.8613 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 58899 | 207499 | 142.8 | 6.355e-33 | 0.9369 |
chr13:72441665 | rs3759505 | - | C>T | 3191 | 13524 | 142.5 | 7.401e-33 | 0.7896 |
chr22:46381234 | rs62228062 | - | A>G | 56166 | 180613 | 64.2 | 1.125e-15 | 1.046 |
chr22:46362396 | rs9330811 | WNT7B | G>A | 90035 | 306027 | 61.49 | 4.445e-15 | 0.9615 |
chr22:46381414 | rs62228064 | - | G>A | 31833 | 102209 | 34.31 | 4.693e-09 | 1.042 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 50468 | 171992 | 31.98 | 1.559e-08 | 0.9677 |
chr9:128721295 | rs7867968 | PBX3 | T>C | 65248 | 221435 | 31.3 | 2.209e-08 | 0.9705 |
chr3:35667761 | rs10490871 | - | A>G | 78604 | 256590 | 30.81 | 2.842e-08 | 1.029 |
chr14:69704553 | rs8007859 | EXD2 | T>G | 80811 | 273396 | 30.72 | 2.983e-08 | 0.9722 |
chr10:105041253 | rs72846169 | INA | T>G | 11431 | 40209 | 30.17 | 3.965e-08 | 0.9419 |
chr16:5688179 | rs758457 | RBFOX1 | A>G | 16823 | 58535 | 29.19 | 6.556e-08 | 0.9519 |
chr2:136594158 | rs2236783 | LCT | A>G | 43897 | 149771 | 29.12 | 6.806e-08 | 0.9676 |
chr6:396321 | rs12203592 | IRF4 | C>T | 46884 | 152031 | 29.0 | 7.23e-08 | 1.033 |
chr9:128746044 | rs7868608 | - | G>A | 60233 | 204413 | 28.45 | 9.634e-08 | 0.9712 |
chr4:151207127 | rs3749574 | LRBA | C>T | 68313 | 222781 | 28.13 | 1.133e-07 | 1.029 |
chr18:45375152 | rs112826329 | SMAD2 | C>T | 3122 | 11534 | 27.79 | 1.353e-07 | 0.8984 |
chr2:136787402 | rs6716536 | - | C>T | 50385 | 171495 | 27.61 | 1.483e-07 | 0.9699 |
chr6:31602967 | rs1046089 | PRRC2A | G>A | 76806 | 250946 | 27.61 | 1.48e-07 | 1.027 |
chr14:69701863 | rs4243633 | EXD2 | A>C | 80369 | 271409 | 27.09 | 1.942e-07 | 0.9738 |
chr2:136643555 | rs309125 | - | C>T | 45682 | 155612 | 26.73 | 2.339e-07 | 0.9694 |
chr4:151206319 | rs6817154 | LRBA | T>C | 68281 | 222777 | 26.71 | 2.367e-07 | 1.028 |
chr7:2078981 | rs56226325 | MAD1L1 | C>T | 32242 | 110447 | 26.67 | 2.407e-07 | 0.9651 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr22:46381234 | rs62228062 | - | A>G | 56166 | 30860 | 41.89 | 9.656e-11 | 1.055 |
chr22:46362396 | rs9330811 | WNT7B | G>A | 90035 | 52568 | 27.06 | 1.971e-07 | 0.9629 |
chr8:70576233 | rs77916566 | - | T>C | 2330 | 1563 | 24.26 | 8.426e-07 | 0.8506 |
chr6:31616366 | rs805303 | BAG6 | G>A | 80080 | 44786 | 22.34 | 2.28e-06 | 1.036 |
chr6:31601513 | rs2242659 | PRRC2A | A>G | 80385 | 44949 | 21.93 | 2.83e-06 | 1.035 |
chr6:31618121 | rs805301 | BAG6 | A>C | 80187 | 44845 | 21.88 | 2.909e-06 | 1.035 |
chr6:396321 | rs12203592 | IRF4 | C>T | 46884 | 25972 | 21.48 | 3.575e-06 | 1.041 |
chr1:213746835 | rs72749606 | - | C>G | 7884 | 4891 | 21.29 | 3.94e-06 | 0.9179 |
chr5:79357338 | rs16877466 | THBS4 | C>G | 7517 | 4672 | 21.04 | 4.507e-06 | 0.9166 |
chr6:31602967 | rs1046089 | PRRC2A | G>A | 76806 | 42935 | 21.03 | 4.529e-06 | 1.035 |
chr12:108537995 | rs73199508 | WSCD2 | C>T | 16549 | 9998 | 20.8 | 5.103e-06 | 0.9415 |
chr6:475489 | rs12210050 | - | C>T | 43652 | 24151 | 20.54 | 5.845e-06 | 1.042 |
chr22:38580917 | rs13056506 | PLA2G6 | T>G | 84581 | 49292 | 20.41 | 6.262e-06 | 0.9674 |
chr6:31634193 | rs805257 | CSNK2B | A>G | 80495 | 45051 | 20.13 | 7.251e-06 | 1.034 |
chr20:23700824 | rs7266357 | - | T>G | 32862 | 19491 | 19.94 | 7.977e-06 | 0.9569 |
chr6:32148031 | rs1062070 | RNF5 | A>G | 42670 | 23615 | 19.87 | 8.293e-06 | 1.041 |
chr12:622926 | rs12818044 | B4GALNT3 | G>A | 28990 | 17226 | 19.68 | 9.167e-06 | 0.955 |
chr6:32147696 | rs3130349 | RNF5 | G>A | 43052 | 23845 | 19.13 | 1.221e-05 | 1.04 |
chr2:17993836 | rs17315862 | - | T>C | 9843 | 5229 | 19.08 | 1.253e-05 | 1.079 |
chr22:38597378 | rs4608623 | PLA2G6 | T>G | 92812 | 54001 | 19.07 | 1.263e-05 | 0.9688 |