Neoplasm of the nervous system

0004375

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

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Interactive Plot

Statistics

Case	Control
30275	429919

Phenotype Definition

A tumor (abnormal growth of tissue) of the nervous system. [HPO:probinson]

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr3:58209096	rs77256534	-	C>T	2032	25350	29.57	5.4e-08	1.136
chr3:58503984	rs77781968	ACOX2	G>T	1924	23975	28.58	8.975e-08	1.137
chr14:49519533	rs55658248	-	G>T	5968	78948	25.54	4.329e-07	1.074
chr7:103589901	rs35662900	RELN	A>G	21660	297047	25.46	4.513e-07	1.045
chr7:103601362	rs7792642	RELN	C>T	22322	306407	25.38	4.718e-07	1.044
chr10:119264941	rs171445	-	A>G	21252	308693	24.66	6.854e-07	0.9579
chr7:103621551	rs4621738	RELN	A>G	21954	301438	23.78	1.081e-06	1.043
chr10:82426438	rs12412193	-	A>G	3448	44807	23.24	1.432e-06	1.091
chr6:68847079	rs7739308	-	G>A	9186	123498	23.18	1.472e-06	1.058
chr10:21834536	rs7098100	MLLT10	G>A	22433	308169	22.94	1.67e-06	1.042
chr2:72356303	rs7583202	-	A>G	1686	21151	22.32	2.308e-06	1.129
chr23:106146349	rs5962774	MORC4	T>C	862	10164	22.31	2.322e-06	1.184
chr6:396321	rs12203592	IRF4	C>T	13790	187415	22.26	2.383e-06	1.048
chr23:122718607	rs73231113	-	T>C	5656	83705	22.14	2.53e-06	0.9337
chr23:50659210	Affx-52372905	BMP15	C>CTCT	855	10083	22.06	2.644e-06	1.184
chr23:22138571	rs5951701	PHEX	G>A	2745	34902	22.01	2.706e-06	1.1
chr4:118385980	rs13106460	-	A>G	8840	118924	21.86	2.939e-06	1.057
chr10:21782842	rs5011832	-	T>C	23357	321519	21.77	3.066e-06	1.04
chr23:136434254	rs4269687	-	G>A	2295	28945	21.52	3.499e-06	1.108
chr5:168646778	rs35479935	SLIT3	G>T	21074	305741	21.43	3.665e-06	0.9606
chr3:58503984	rs77781968	ACOX2	G>T	1878	23359	31.47	2.022e-08	1.146
chr3:58209096	rs77256534	-	C>T	1970	24577	31.46	2.041e-08	1.143
chr7:103589901	rs35662900	RELN	A>G	20654	284231	28.73	8.342e-08	1.049
chr6:396321	rs12203592	IRF4	C>T	13615	185300	27.97	1.23e-07	1.055
chr10:21834536	rs7098100	MLLT10	G>A	21085	290283	27.97	1.233e-07	1.048
chr7:103601362	rs7792642	RELN	C>T	21261	292936	27.95	1.246e-07	1.048
chr10:21957229	rs2183271	MLLT10	T>C	22033	303231	26.12	3.205e-07	1.046
chr7:103621551	rs4621738	RELN	A>G	20756	286315	24.62	6.985e-07	1.045
chr6:421281	rs62389423	-	G>A	11091	150774	23.9	1.016e-06	1.055
chr10:119264941	rs171445	-	A>G	20421	298303	23.55	1.22e-06	0.9578
chr10:21782842	rs5011832	-	T>C	22041	304699	23.36	1.34e-06	1.043
chr10:21889083	rs12356674	MLLT10	G>T	17773	244478	23.2	1.462e-06	1.046
chr4:118385980	rs13106460	-	A>G	8500	114763	23.11	1.526e-06	1.06
chr10:21824727	rs10828249	MLLT10	G>A	21323	294579	22.99	1.632e-06	1.043
chr11:113364691	rs17602038	-	T>C	22385	326028	21.64	3.296e-06	0.9603
chr6:25918225	rs80215559	SLC17A2	T>C	4875	64820	21.33	3.867e-06	1.074
chr11:113364647	rs4245150	-	T>G	22394	326191	21.18	4.19e-06	0.9607
chr11:113334227	rs34632468	DRD2	CT>C	22378	325713	21.18	4.179e-06	0.9607
chr7:103871529	rs6971455	-	G>T	16330	224622	20.88	4.898e-06	1.044
chr6:25842951	rs1408272	SLC17A3	T>G	5020	66864	20.85	4.957e-06	1.072

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr3:58503984	rs77781968	ACOX2	G>T	1878	12005	31.77	1.738e-08	1.152
chr3:58209096	rs77256534	-	C>T	1970	12650	31.1	2.456e-08	1.147
chr7:103589901	rs35662900	RELN	A>G	20654	146845	27.12	1.916e-07	1.049
chr7:103601362	rs7792642	RELN	C>T	21261	151580	23.56	1.211e-06	1.045
chr10:119264941	rs171445	-	A>G	20421	154141	22.47	2.136e-06	0.9575
chr9:4175324	rs10814856	GLIS3	T>C	18580	132158	22.33	2.293e-06	1.046
chr4:118385980	rs13106460	-	A>G	8500	59264	22.05	2.655e-06	1.06
chr7:103621551	rs4621738	RELN	A>G	20756	148126	21.14	4.28e-06	1.043
chr3:58306459	rs116083074	RPP14	A>G	909	5680	20.48	6.024e-06	1.177
chr7:138922422	rs117478274	UBN2	G>A	1749	11452	20.17	7.09e-06	1.124
chr2:72356303	rs7583202	-	A>G	1103	7006	20.15	7.176e-06	1.158
chr6:68847079	rs7739308	-	G>A	8452	59046	20.11	7.314e-06	1.058
chr10:82426438	rs12412193	-	A>G	3203	21650	19.68	9.155e-06	1.09
chr23:43786898	rs34387930	-	G>A	2926	19884	19.63	9.402e-06	1.095
chr10:116431417	rs74366846	ABLIM1	C>T	1987	13123	19.57	9.706e-06	1.114
chr7:33576738	rs2598409	BBS9	T>C	4448	30470	19.28	1.13e-05	1.076
chr4:174461309	rs6825676	-	T>C	10950	83538	19.18	1.191e-05	0.9518
chr7:103871529	rs6971455	-	G>T	16330	116093	19.13	1.224e-05	1.044
chr8:23852510	rs62502258	-	A>G	4092	27973	18.89	1.388e-05	1.078
chr2:175533753	rs11675884	WIPF1	A>G	17703	126133	18.68	1.545e-05	1.042

Associated Diseases ^ⓘ

ID	Name	Top Correlation
ICD: C693	Choroid	1/20
ICD: D320	Cerebral meninges	2/20
ICD: D630	Anaemia in neoplastic disease	1/20
ICD: M5499	Dorsalgia, unspecified (Site unspecified)	1/20
ICD: R42	Dizziness and giddiness	2/20

ID	Name	Top Correlation
ICD-10: A415	Septicaemia due to other Gram-negative organisms	0/20
ICD-10: C181	Appendix	0/20
ICD-10: C252	Tail of pancreas	0/20
ICD-10: C260	Intestinal tract, part unspecified	0/20
ICD-10: C719	Brain, unspecified	0/20
ICD-10: C780	Secondary malignant neoplasm of lung	0/20
ICD-10: C784	Secondary malignant neoplasm of small intestine	0/20
ICD-10: C786	Secondary malignant neoplasm of retroperitoneum and peritoneum	0/20
ICD-10: C793	Secondary malignant neoplasm of brain and cerebral meninges	0/20
ICD-10: C797	Secondary malignant neoplasm of adrenal gland	0/20
ICD-10: D24	Benign neoplasm of breast	0/20
ICD-10: D329	Meninges, unspecified	0/20
ICD-10: D333	Cranial nerves	0/20
ICD-10: D370	Lip, oral cavity and pharynx	0/20
ICD-10: D377	Other digestive organs	0/20
ICD-10: D432	Brain, unspecified	0/20
ICD-10: D758	Other specified diseases of blood and blood-forming organs	0/20
ICD-10: F320	Mild depressive episode	0/20
ICD-10: G519	Disorder of facial nerve, unspecified	0/20
ICD-10: H050	Acute inflammation of orbit	0/20
ICD-10: H332	Serous retinal detachment	0/20
ICD-10: H531	Subjective visual disturbances	0/20
ICD-10: I844	External haemorrhoids with other complications	0/20
ICD-10: I848	Unspecified haemorrhoids with other complications	0/20
ICD-10: K140	Glossitis	0/20
ICD-10: K350	Acute appendicitis with generalised peritonitis	0/20
ICD-10: K862	Cyst of pancreas	0/20
ICD-10: L539	Erythematous condition, unspecified	0/20
ICD-10: M548	Other dorsalgia	0/20
ICD-10: M5490	Dorsalgia, unspecified (Multiple sites in spine)	0/20
ICD-10: M5494	Dorsalgia, unspecified (Thoracic region)	0/20
ICD-10: M5496	Dorsalgia, unspecified (Lumbar region)	0/20
ICD-10: N601	Diffuse cystic mastopathy	0/20
ICD-10: Q850	Neurofibromatosis (nonmalignant)	0/20
ICD-10: R521	Chronic intractable pain	0/20
ICD-10: R900	Intracranial space-occupying lesion	0/20
ICD-10: R935	Abnormal findings on diagnostic imaging of other abdominal regions, including retroperitoneum	0/20
ICD-10: Y433	Other antineoplastic drugs	0/20

Neoplasm of the nervous system

0004375

Normal Case/Contol ⓘ

Sibling Case/Control ⓘ

Links

Statistics

Phenotype Definition

Top SNP Information Show Normal Table Show Sibling SNP

Associated Diseases ⓘ Shared SNP diseases No shared SNP diseases

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Top SNP Information

Associated Diseases ^ⓘ