Case | Control |
---|---|
30275 | 429919 |
A tumor (abnormal growth of tissue) of the nervous system. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr3:58209096 | rs77256534 | - | C>T | 2032 | 25350 | 29.57 | 5.4e-08 | 1.136 |
chr3:58503984 | rs77781968 | ACOX2 | G>T | 1924 | 23975 | 28.58 | 8.975e-08 | 1.137 |
chr14:49519533 | rs55658248 | - | G>T | 5968 | 78948 | 25.54 | 4.329e-07 | 1.074 |
chr7:103589901 | rs35662900 | RELN | A>G | 21660 | 297047 | 25.46 | 4.513e-07 | 1.045 |
chr7:103601362 | rs7792642 | RELN | C>T | 22322 | 306407 | 25.38 | 4.718e-07 | 1.044 |
chr10:119264941 | rs171445 | - | A>G | 21252 | 308693 | 24.66 | 6.854e-07 | 0.9579 |
chr7:103621551 | rs4621738 | RELN | A>G | 21954 | 301438 | 23.78 | 1.081e-06 | 1.043 |
chr10:82426438 | rs12412193 | - | A>G | 3448 | 44807 | 23.24 | 1.432e-06 | 1.091 |
chr6:68847079 | rs7739308 | - | G>A | 9186 | 123498 | 23.18 | 1.472e-06 | 1.058 |
chr10:21834536 | rs7098100 | MLLT10 | G>A | 22433 | 308169 | 22.94 | 1.67e-06 | 1.042 |
chr2:72356303 | rs7583202 | - | A>G | 1686 | 21151 | 22.32 | 2.308e-06 | 1.129 |
chr23:106146349 | rs5962774 | MORC4 | T>C | 862 | 10164 | 22.31 | 2.322e-06 | 1.184 |
chr6:396321 | rs12203592 | IRF4 | C>T | 13790 | 187415 | 22.26 | 2.383e-06 | 1.048 |
chr23:122718607 | rs73231113 | - | T>C | 5656 | 83705 | 22.14 | 2.53e-06 | 0.9337 |
chr23:50659210 | Affx-52372905 | BMP15 | C>CTCT | 855 | 10083 | 22.06 | 2.644e-06 | 1.184 |
chr23:22138571 | rs5951701 | PHEX | G>A | 2745 | 34902 | 22.01 | 2.706e-06 | 1.1 |
chr4:118385980 | rs13106460 | - | A>G | 8840 | 118924 | 21.86 | 2.939e-06 | 1.057 |
chr10:21782842 | rs5011832 | - | T>C | 23357 | 321519 | 21.77 | 3.066e-06 | 1.04 |
chr23:136434254 | rs4269687 | - | G>A | 2295 | 28945 | 21.52 | 3.499e-06 | 1.108 |
chr5:168646778 | rs35479935 | SLIT3 | G>T | 21074 | 305741 | 21.43 | 3.665e-06 | 0.9606 |
chr3:58503984 | rs77781968 | ACOX2 | G>T | 1878 | 23359 | 31.47 | 2.022e-08 | 1.146 |
chr3:58209096 | rs77256534 | - | C>T | 1970 | 24577 | 31.46 | 2.041e-08 | 1.143 |
chr7:103589901 | rs35662900 | RELN | A>G | 20654 | 284231 | 28.73 | 8.342e-08 | 1.049 |
chr6:396321 | rs12203592 | IRF4 | C>T | 13615 | 185300 | 27.97 | 1.23e-07 | 1.055 |
chr10:21834536 | rs7098100 | MLLT10 | G>A | 21085 | 290283 | 27.97 | 1.233e-07 | 1.048 |
chr7:103601362 | rs7792642 | RELN | C>T | 21261 | 292936 | 27.95 | 1.246e-07 | 1.048 |
chr10:21957229 | rs2183271 | MLLT10 | T>C | 22033 | 303231 | 26.12 | 3.205e-07 | 1.046 |
chr7:103621551 | rs4621738 | RELN | A>G | 20756 | 286315 | 24.62 | 6.985e-07 | 1.045 |
chr6:421281 | rs62389423 | - | G>A | 11091 | 150774 | 23.9 | 1.016e-06 | 1.055 |
chr10:119264941 | rs171445 | - | A>G | 20421 | 298303 | 23.55 | 1.22e-06 | 0.9578 |
chr10:21782842 | rs5011832 | - | T>C | 22041 | 304699 | 23.36 | 1.34e-06 | 1.043 |
chr10:21889083 | rs12356674 | MLLT10 | G>T | 17773 | 244478 | 23.2 | 1.462e-06 | 1.046 |
chr4:118385980 | rs13106460 | - | A>G | 8500 | 114763 | 23.11 | 1.526e-06 | 1.06 |
chr10:21824727 | rs10828249 | MLLT10 | G>A | 21323 | 294579 | 22.99 | 1.632e-06 | 1.043 |
chr11:113364691 | rs17602038 | - | T>C | 22385 | 326028 | 21.64 | 3.296e-06 | 0.9603 |
chr6:25918225 | rs80215559 | SLC17A2 | T>C | 4875 | 64820 | 21.33 | 3.867e-06 | 1.074 |
chr11:113364647 | rs4245150 | - | T>G | 22394 | 326191 | 21.18 | 4.19e-06 | 0.9607 |
chr11:113334227 | rs34632468 | DRD2 | CT>C | 22378 | 325713 | 21.18 | 4.179e-06 | 0.9607 |
chr7:103871529 | rs6971455 | - | G>T | 16330 | 224622 | 20.88 | 4.898e-06 | 1.044 |
chr6:25842951 | rs1408272 | SLC17A3 | T>G | 5020 | 66864 | 20.85 | 4.957e-06 | 1.072 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr3:58503984 | rs77781968 | ACOX2 | G>T | 1878 | 12005 | 31.77 | 1.738e-08 | 1.152 |
chr3:58209096 | rs77256534 | - | C>T | 1970 | 12650 | 31.1 | 2.456e-08 | 1.147 |
chr7:103589901 | rs35662900 | RELN | A>G | 20654 | 146845 | 27.12 | 1.916e-07 | 1.049 |
chr7:103601362 | rs7792642 | RELN | C>T | 21261 | 151580 | 23.56 | 1.211e-06 | 1.045 |
chr10:119264941 | rs171445 | - | A>G | 20421 | 154141 | 22.47 | 2.136e-06 | 0.9575 |
chr9:4175324 | rs10814856 | GLIS3 | T>C | 18580 | 132158 | 22.33 | 2.293e-06 | 1.046 |
chr4:118385980 | rs13106460 | - | A>G | 8500 | 59264 | 22.05 | 2.655e-06 | 1.06 |
chr7:103621551 | rs4621738 | RELN | A>G | 20756 | 148126 | 21.14 | 4.28e-06 | 1.043 |
chr3:58306459 | rs116083074 | RPP14 | A>G | 909 | 5680 | 20.48 | 6.024e-06 | 1.177 |
chr7:138922422 | rs117478274 | UBN2 | G>A | 1749 | 11452 | 20.17 | 7.09e-06 | 1.124 |
chr2:72356303 | rs7583202 | - | A>G | 1103 | 7006 | 20.15 | 7.176e-06 | 1.158 |
chr6:68847079 | rs7739308 | - | G>A | 8452 | 59046 | 20.11 | 7.314e-06 | 1.058 |
chr10:82426438 | rs12412193 | - | A>G | 3203 | 21650 | 19.68 | 9.155e-06 | 1.09 |
chr23:43786898 | rs34387930 | - | G>A | 2926 | 19884 | 19.63 | 9.402e-06 | 1.095 |
chr10:116431417 | rs74366846 | ABLIM1 | C>T | 1987 | 13123 | 19.57 | 9.706e-06 | 1.114 |
chr7:33576738 | rs2598409 | BBS9 | T>C | 4448 | 30470 | 19.28 | 1.13e-05 | 1.076 |
chr4:174461309 | rs6825676 | - | T>C | 10950 | 83538 | 19.18 | 1.191e-05 | 0.9518 |
chr7:103871529 | rs6971455 | - | G>T | 16330 | 116093 | 19.13 | 1.224e-05 | 1.044 |
chr8:23852510 | rs62502258 | - | A>G | 4092 | 27973 | 18.89 | 1.388e-05 | 1.078 |
chr2:175533753 | rs11675884 | WIPF1 | A>G | 17703 | 126133 | 18.68 | 1.545e-05 | 1.042 |