Case | Control |
---|---|
91195 | 368999 |
A tumor (abnormal growth of tissue) of the gastrointestinal tract. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 4196 | 23330 | 347.2 | 1.733e-77 | 0.7299 |
chr15:48392165 | rs1834640 | - | A>G | 5024 | 26600 | 292.2 | 1.658e-65 | 0.7665 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 11613 | 55445 | 246.2 | 1.732e-55 | 0.8477 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 9794 | 47198 | 231.1 | 3.361e-52 | 0.8409 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 2991 | 16386 | 221.5 | 4.2e-50 | 0.7428 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 2820 | 15325 | 197.2 | 8.382e-45 | 0.749 |
chr5:147671850 | rs7724380 | - | G>A | 3191 | 16992 | 191.8 | 1.288e-43 | 0.7643 |
chr17:58508582 | rs8071181 | C17orf64 | G>A | 2357 | 13060 | 187.9 | 9.315e-43 | 0.7352 |
chr16:7465748 | rs4786166 | RBFOX1 | C>T | 2783 | 15011 | 184.0 | 6.651e-42 | 0.7549 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 2598 | 14142 | 183.3 | 9.089e-42 | 0.7482 |
chr5:147666044 | rs7707813 | - | T>C | 2979 | 15784 | 171.6 | 3.27e-39 | 0.7687 |
chr13:72441665 | rs3759505 | - | C>T | 2617 | 14098 | 170.9 | 4.72e-39 | 0.7562 |
chr9:127267689 | rs3814134 | NR5A1 | A>G | 4866 | 24340 | 169.6 | 8.857e-39 | 0.8131 |
chr6:170242949 | rs9396958 | - | T>C | 2514 | 13600 | 169.1 | 1.14e-38 | 0.7532 |
chr10:31495974 | rs1250307 | - | A>G | 3703 | 19069 | 168.7 | 1.449e-38 | 0.7905 |
chr9:140957557 | rs11137360 | CACNA1B | A>G | 3387 | 17619 | 167.9 | 2.077e-38 | 0.7828 |
chr9:137925543 | rs7027926 | - | G>A | 2643 | 14177 | 167.4 | 2.69e-38 | 0.7593 |
chr13:113979968 | rs200506581 | GRTP1 | C>CCACA | 1924 | 10802 | 166.9 | 3.463e-38 | 0.7261 |
chr13:113979972 | Affx-80297025 | GRTP1 | A>ACACT | 1923 | 10784 | 165.8 | 6.177e-38 | 0.7268 |
chr12:3417813 | rs729914 | - | G>T | 2516 | 13571 | 165.7 | 6.355e-38 | 0.7554 |
chr6:396321 | rs12203592 | IRF4 | C>T | 40687 | 158228 | 63.22 | 1.848e-15 | 1.051 |
chr18:46453463 | rs4939827 | SMAD7 | T>C | 85596 | 353082 | 48.35 | 3.572e-12 | 0.9642 |
chr20:60920700 | rs6143035 | LAMA5 | T>C | 43816 | 182759 | 43.02 | 5.405e-11 | 0.9607 |
chr20:60899182 | rs11698080 | LAMA5 | C>T | 39087 | 163013 | 40.25 | 2.238e-10 | 0.9602 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 40195 | 167561 | 37.9 | 7.436e-10 | 0.962 |
chr6:421281 | rs62389423 | - | G>A | 32969 | 128896 | 37.42 | 9.504e-10 | 1.043 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 34809 | 136413 | 35.15 | 3.046e-09 | 1.04 |
chr17:50270268 | rs12939066 | - | C>T | 61496 | 243512 | 34.36 | 4.591e-09 | 1.033 |
chr20:60898244 | rs57627107 | LAMA5 | A>G | 40809 | 169826 | 34.26 | 4.813e-09 | 0.9639 |
chr19:46262286 | rs725660 | BHMG1 | C>A | 67268 | 266972 | 31.93 | 1.596e-08 | 1.031 |
chr20:60921044 | rs4925386 | LAMA5 | C>T | 56487 | 233582 | 31.75 | 1.754e-08 | 0.9687 |
chr20:60958651 | rs11699160 | - | T>C | 63883 | 263735 | 30.28 | 3.736e-08 | 0.9703 |
chr11:439879 | rs7102822 | ANO9 | G>A | 73030 | 290142 | 29.55 | 5.446e-08 | 1.03 |
chr6:30979793 | rs9366764 | MUC22 | G>A | 25924 | 101249 | 29.39 | 5.92e-08 | 1.042 |
chr11:111171709 | rs3802842 | COLCA2 | A>C | 56063 | 222080 | 29.29 | 6.238e-08 | 1.031 |
chr6:30984404 | rs3869096 | MUC22 | T>G | 25920 | 101331 | 28.7 | 8.465e-08 | 1.041 |
chr15:32994756 | rs4779584 | - | C>T | 35317 | 138858 | 28.61 | 8.835e-08 | 1.036 |
chr6:30981361 | rs9380205 | MUC22 | C>G | 25950 | 101419 | 28.54 | 9.158e-08 | 1.041 |
chr18:46400784 | rs75518588 | - | G>A | 38576 | 151951 | 28.47 | 9.51e-08 | 1.035 |
chr11:111165009 | rs7103178 | - | T>C | 56182 | 222611 | 28.39 | 9.901e-08 | 1.031 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr18:46453463 | rs4939827 | SMAD7 | T>C | 85596 | 166120 | 39.12 | 3.992e-10 | 0.9643 |
chr25:2645366 | rs311083 | - | C>G | 67252 | 125421 | 34.03 | 5.415e-09 | 1.036 |
chr20:60920700 | rs6143035 | LAMA5 | T>C | 43816 | 85882 | 32.25 | 1.358e-08 | 0.9624 |
chr19:46262286 | rs725660 | BHMG1 | C>A | 67268 | 125460 | 29.23 | 6.432e-08 | 1.033 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 40195 | 78756 | 28.89 | 7.67e-08 | 0.9633 |
chr25:154999134 | rs6642320 | - | G>A | 63614 | 123490 | 28.6 | 8.903e-08 | 0.9676 |
chr25:2649832 | rs311088 | - | T>C | 80196 | 150024 | 28.15 | 1.125e-07 | 1.031 |
chr6:30792364 | rs12206022 | - | A>G | 22777 | 45134 | 27.81 | 1.34e-07 | 0.9552 |
chr18:46400784 | rs75518588 | - | G>A | 38576 | 71314 | 27.56 | 1.523e-07 | 1.038 |
chr6:30763756 | rs3131063 | - | G>A | 80858 | 156569 | 27.43 | 1.626e-07 | 0.97 |
chr6:30792270 | rs12192704 | - | G>A | 22728 | 45016 | 27.12 | 1.911e-07 | 0.9557 |
chr20:60899182 | rs11698080 | LAMA5 | C>T | 39087 | 76451 | 26.34 | 2.86e-07 | 0.9644 |
chr6:30792235 | rs4713391 | - | T>C | 22823 | 45171 | 26.21 | 3.06e-07 | 0.9565 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 34809 | 64289 | 25.67 | 4.052e-07 | 1.038 |
chr6:30773314 | rs4713376 | - | A>C | 22726 | 44955 | 25.55 | 4.31e-07 | 0.9569 |
chr20:60958651 | rs11699160 | - | T>C | 63883 | 124061 | 25.24 | 5.074e-07 | 0.97 |
chr6:30773239 | rs4711240 | - | T>C | 22777 | 45035 | 25.04 | 5.612e-07 | 0.9574 |
chr6:30796932 | rs12198842 | - | T>C | 22413 | 44339 | 24.97 | 5.821e-07 | 0.9572 |
chr20:60898244 | rs57627107 | LAMA5 | A>G | 40809 | 79779 | 24.82 | 6.287e-07 | 0.9661 |
chr11:439879 | rs7102822 | ANO9 | G>A | 73030 | 136468 | 24.68 | 6.777e-07 | 1.03 |