Case | Control |
---|---|
65463 | 394731 |
Abnormality of the male genital system. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 8500 | 58558 | 126.6 | 2.327e-29 | 0.8739 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 7189 | 49803 | 115.7 | 5.596e-27 | 0.8699 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 3301 | 24225 | 107.2 | 4.095e-25 | 0.8235 |
chr25:2692710 | rs2259750 | - | A>G | 27193 | 155678 | 97.2 | 6.262e-23 | 1.075 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 1641 | 12822 | 93.91 | 3.303e-22 | 0.7749 |
chr1:236085940 | rs12038310 | - | C>T | 1746 | 13530 | 93.84 | 3.428e-22 | 0.7809 |
chr5:1322087 | rs401681 | CLPTM1L | C>T | 58508 | 367160 | 93.2 | 4.718e-22 | 0.9448 |
chr25:155058865 | rs73234550 | - | G>A | 4856 | 25440 | 91.36 | 1.199e-21 | 1.164 |
chr6:170242949 | rs9396958 | - | T>C | 1860 | 14254 | 90.66 | 1.707e-21 | 0.7899 |
chr15:48392165 | rs1834640 | - | A>G | 3899 | 27725 | 87.92 | 6.817e-21 | 0.85 |
chr5:1315660 | rs4975616 | - | A>G | 56468 | 354348 | 87.72 | 7.539e-21 | 0.9462 |
chr20:2315543 | rs6132532 | AL121899.2 | A>G | 6300 | 43234 | 86.43 | 1.45e-20 | 0.8796 |
chr25:2661556 | rs73188900 | - | A>C | 3015 | 15266 | 85.28 | 2.584e-20 | 1.204 |
chr25:154974730 | rs144759332 | - | C>G | 3347 | 24039 | 85.26 | 2.619e-20 | 0.8417 |
chr25:2644302 | rs1136470 | - | C>T | 17692 | 115201 | 83.79 | 5.512e-20 | 0.9238 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 11830 | 78278 | 83.43 | 6.591e-20 | 0.91 |
chr20:19214390 | rs6136658 | SLC24A3 | G>A | 1569 | 12106 | 81.05 | 2.204e-19 | 0.7847 |
chr6:22050187 | rs1736507 | - | C>A | 1679 | 12834 | 80.59 | 2.772e-19 | 0.7914 |
chr10:5790616 | rs2797492 | TASOR2 | A>G | 1300 | 10242 | 79.38 | 5.116e-19 | 0.7688 |
chr2:26113913 | rs78404020 | - | A>G | 1591 | 12226 | 79.32 | 5.277e-19 | 0.788 |
chr5:1322087 | rs401681 | CLPTM1L | C>T | 55703 | 347795 | 102.2 | 5.072e-24 | 0.9408 |
chr5:1315660 | rs4975616 | - | A>G | 53452 | 333774 | 96.11 | 1.088e-22 | 0.9422 |
chr25:2692710 | rs2259750 | - | A>G | 25229 | 143373 | 89.72 | 2.739e-21 | 1.075 |
chr25:2644302 | rs1136470 | - | C>T | 16818 | 108996 | 86.16 | 1.662e-20 | 0.9208 |
chr5:1342714 | rs31489 | CLPTM1L | C>A | 51916 | 323697 | 83.47 | 6.466e-20 | 0.9458 |
chr25:2661556 | rs73188900 | - | A>C | 2993 | 15121 | 79.69 | 4.373e-19 | 1.198 |
chr25:155058865 | rs73234550 | - | G>A | 4798 | 25213 | 77.95 | 1.058e-18 | 1.152 |
chr25:154986418 | rs142918084 | - | C>G | 3874 | 26827 | 65.72 | 5.202e-16 | 0.868 |
chr25:154999134 | rs6642320 | - | G>A | 44705 | 278658 | 62.21 | 3.089e-15 | 0.9508 |
chr25:2645366 | rs311083 | - | C>G | 49067 | 287489 | 60.32 | 8.042e-15 | 1.049 |
chr25:155183483 | rs73237015 | - | G>A | 23180 | 146762 | 58.11 | 2.476e-14 | 0.9423 |
chr25:155104608 | rs5940618 | - | G>A | 27588 | 159445 | 56.91 | 4.564e-14 | 1.057 |
chr25:154935282 | rs112437556 | - | C>T | 3661 | 25160 | 56.11 | 6.856e-14 | 0.8742 |
chr25:2685254 | rs311142 | - | C>T | 52170 | 306223 | 55.63 | 8.763e-14 | 1.047 |
chr25:154974730 | rs144759332 | - | C>G | 2776 | 19423 | 55.35 | 1.01e-13 | 0.8586 |
chr25:2691012 | rs142162416 | - | A>G | 5250 | 35190 | 54.38 | 1.655e-13 | 0.8946 |
chr25:2676915 | rs311115 | - | G>C | 9017 | 58894 | 54.34 | 1.684e-13 | 0.9172 |
chr25:2679949 | rs311121 | - | G>T | 17753 | 113035 | 53.57 | 2.494e-13 | 0.9384 |
chr5:1356684 | rs37004 | - | C>T | 29728 | 186358 | 50.63 | 1.113e-12 | 0.9507 |
chr25:155053713 | rs28884873 | - | G>A | 20911 | 120138 | 49.63 | 1.856e-12 | 1.059 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr25:2692710 | rs2259750 | - | A>G | 25229 | 31078 | 272.2 | 3.777e-61 | 1.168 |
chr25:2661556 | rs73188900 | - | A>C | 2993 | 2812 | 235.9 | 3.035e-53 | 1.499 |
chr25:2644302 | rs1136470 | - | C>T | 16818 | 27045 | 232.5 | 1.66e-52 | 0.8512 |
chr25:155058865 | rs73234550 | - | G>A | 4798 | 4997 | 220.2 | 8.003e-50 | 1.355 |
chr25:154986418 | rs142918084 | - | C>G | 3874 | 7152 | 199.7 | 2.375e-45 | 0.751 |
chr25:154999134 | rs6642320 | - | G>A | 44705 | 66945 | 198.6 | 4.182e-45 | 0.8969 |
chr25:155104608 | rs5940618 | - | G>A | 27588 | 34949 | 194.5 | 3.358e-44 | 1.134 |
chr25:2679949 | rs311121 | - | G>T | 17753 | 28036 | 189.0 | 5.241e-43 | 0.8673 |
chr25:2645366 | rs311083 | - | C>G | 49067 | 64377 | 184.5 | 5.171e-42 | 1.108 |
chr25:154935282 | rs112437556 | - | C>T | 3661 | 6681 | 174.6 | 7.18e-40 | 0.7592 |
chr25:155183483 | rs73237015 | - | G>A | 23180 | 35796 | 170.9 | 4.706e-39 | 0.8851 |
chr25:2685254 | rs311142 | - | C>T | 52170 | 68979 | 158.7 | 2.203e-36 | 1.098 |
chr25:155013081 | rs146997510 | - | T>A | 4037 | 4306 | 158.0 | 3.043e-36 | 1.321 |
chr25:155053713 | rs28884873 | - | G>A | 20911 | 26307 | 154.7 | 1.592e-35 | 1.133 |
chr25:2691012 | rs142162416 | - | A>G | 5250 | 9042 | 152.3 | 5.467e-35 | 0.8036 |
chr25:154974730 | rs144759332 | - | C>G | 2776 | 5137 | 146.2 | 1.164e-33 | 0.7502 |
chr25:2682149 | rs311128 | - | C>T | 5926 | 10033 | 143.6 | 4.258e-33 | 0.8179 |
chr25:2676915 | rs311115 | - | G>C | 9017 | 14677 | 139.9 | 2.845e-32 | 0.8485 |
chr25:2653913 | rs111628445 | - | G>A | 55497 | 73808 | 135.5 | 2.598e-31 | 1.089 |
chr25:154998312 | rs306885 | - | T>G | 61133 | 89194 | 118.9 | 1.084e-27 | 0.9238 |