Case | Control |
---|---|
43391 | 416803 |
A tumor (abnormal growth of tissue) of the genital system. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr23:106146349 | rs5962774 | MORC4 | T>C | 2071 | 8955 | 632.4 | 1.508e-139 | 1.842 |
chr23:64367019 | rs7064929 | - | G>A | 2993 | 14573 | 599.9 | 1.751e-132 | 1.64 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 2833 | 16544 | 592.4 | 7.351e-131 | 1.644 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 2661 | 15484 | 565.5 | 5.374e-125 | 1.65 |
chr1:173579034 | rs12065033 | AL139142.2 | C>T | 2259 | 13082 | 486.1 | 1e-107 | 1.654 |
chr1:25589335 | rs28670433 | RSRP1 | A>G | 2158 | 12475 | 468.6 | 6.45e-104 | 1.657 |
chr18:9536315 | rs14336 | RALBP1 | A>C | 1943 | 10924 | 467.9 | 9.388e-104 | 1.702 |
chr17:58508582 | rs8071181 | C17orf64 | G>A | 2252 | 13165 | 466.6 | 1.753e-103 | 1.638 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 3637 | 23889 | 444.2 | 1.347e-98 | 1.463 |
chr12:56722060 | rs1918496 | PAN2 | G>T | 1768 | 9849 | 440.1 | 1.027e-97 | 1.717 |
chr13:31074486 | rs7326905 | HMGB1 | G>A | 1640 | 8969 | 436.3 | 6.834e-97 | 1.748 |
chr1:25555672 | rs10903036 | SYF2 | C>T | 2009 | 11604 | 436.1 | 7.583e-97 | 1.656 |
chr12:56755058 | rs4301822 | APOF | A>G | 1879 | 10733 | 428.1 | 4.244e-95 | 1.677 |
chr5:64447660 | rs6879867 | ADAMTS6 | G>A | 1809 | 10228 | 426.3 | 1.051e-94 | 1.691 |
chr23:63410110 | rs61730681 | AMER1 | T>C | 3714 | 20419 | 425.2 | 1.786e-94 | 1.453 |
chr15:48392165 | rs1834640 | - | A>G | 4075 | 27549 | 425.0 | 1.966e-94 | 1.422 |
chr17:29350769 | rs8073072 | - | T>G | 3409 | 22297 | 424.4 | 2.679e-94 | 1.467 |
chr23:63423664 | rs5964740 | AMER1 | C>T | 3708 | 20392 | 424.1 | 3.18e-94 | 1.453 |
chr1:207782889 | rs17047661 | CR1 | A>G | 2083 | 12236 | 423.2 | 5.015e-94 | 1.629 |
chr23:32716110 | rs1800265 | DMD | C>T | 1559 | 6986 | 420.9 | 1.549e-93 | 1.772 |
chr25:2692710 | rs2259750 | - | A>G | 14565 | 154037 | 151.9 | 6.626e-35 | 0.889 |
chr25:155104608 | rs5940618 | - | G>A | 16414 | 170619 | 116.2 | 4.299e-27 | 0.9065 |
chr25:154999134 | rs6642320 | - | G>A | 31834 | 291529 | 112.6 | 2.653e-26 | 1.083 |
chr25:2679949 | rs311121 | - | G>T | 13363 | 117425 | 110.9 | 6.354e-26 | 1.11 |
chr25:2661556 | rs73188900 | - | A>C | 1327 | 16787 | 96.12 | 1.084e-22 | 0.755 |
chr25:155058865 | rs73234550 | - | G>A | 2347 | 27664 | 94.3 | 2.711e-22 | 0.8094 |
chr25:155013081 | rs146997510 | - | T>A | 2015 | 24134 | 94.01 | 3.139e-22 | 0.7969 |
chr25:2645366 | rs311083 | - | C>G | 30503 | 306053 | 82.74 | 9.343e-20 | 0.9341 |
chr25:154935282 | rs112437556 | - | C>T | 3153 | 25668 | 81.61 | 1.656e-19 | 1.19 |
chr25:154986418 | rs142918084 | - | C>G | 3347 | 27354 | 80.94 | 2.33e-19 | 1.183 |
chr25:2644302 | rs1136470 | - | C>T | 12716 | 113098 | 78.14 | 9.6e-19 | 1.094 |
chr25:2691012 | rs142162416 | - | A>G | 4288 | 36152 | 68.38 | 1.348e-16 | 1.147 |
chr25:154998312 | rs306885 | - | T>G | 42299 | 394140 | 67.93 | 1.692e-16 | 1.061 |
chr25:2681878 | rs73190930 | - | A>G | 11709 | 104866 | 59.02 | 1.563e-14 | 1.084 |
chr25:2682149 | rs311128 | - | C>T | 4711 | 40350 | 58.34 | 2.208e-14 | 1.128 |
chr25:2676915 | rs311115 | - | G>C | 6942 | 60969 | 54.79 | 1.345e-13 | 1.103 |
chr25:155183483 | rs73237015 | - | G>A | 16805 | 153137 | 53.79 | 2.235e-13 | 1.069 |
chr25:155053713 | rs28884873 | - | G>A | 12559 | 128490 | 53.3 | 2.867e-13 | 0.9288 |
chr25:2685254 | rs311142 | - | C>T | 32794 | 325599 | 52.88 | 3.539e-13 | 0.9479 |
chr23:154395148 | rs113038688 | - | C>T | 1742 | 16614 | 50.82 | 1.01e-12 | 0.8341 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr25:2692710 | rs2259750 | - | A>G | 14565 | 46597 | 116.0 | 4.741e-27 | 0.8933 |
chr25:155104608 | rs5940618 | - | G>A | 16414 | 51493 | 82.83 | 8.96e-20 | 0.913 |
chr25:154999134 | rs6642320 | - | G>A | 31834 | 88849 | 77.09 | 1.631e-18 | 1.076 |
chr25:2661556 | rs73188900 | - | A>C | 1327 | 5032 | 74.58 | 5.815e-18 | 0.7648 |
chr25:2679949 | rs311121 | - | G>T | 13363 | 35978 | 73.14 | 1.205e-17 | 1.099 |
chr25:155058865 | rs73234550 | - | G>A | 2347 | 8329 | 73.12 | 1.221e-17 | 0.8167 |
chr25:155013081 | rs146997510 | - | T>A | 2015 | 7105 | 58.65 | 1.879e-14 | 0.8225 |
chr25:2645366 | rs311083 | - | C>G | 30503 | 92435 | 54.6 | 1.475e-13 | 0.9409 |
chr25:154986418 | rs142918084 | - | C>G | 3347 | 8439 | 52.72 | 3.837e-13 | 1.163 |
chr25:154935282 | rs112437556 | - | C>T | 3153 | 7932 | 52.58 | 4.129e-13 | 1.168 |
chr25:2644302 | rs1136470 | - | C>T | 12716 | 34601 | 51.12 | 8.696e-13 | 1.084 |
chr25:2691012 | rs142162416 | - | A>G | 4288 | 11100 | 46.61 | 8.659e-12 | 1.134 |
chr25:2681878 | rs73190930 | - | A>G | 11709 | 31985 | 42.41 | 7.39e-11 | 1.078 |
chr25:154998312 | rs306885 | - | T>G | 42299 | 120177 | 40.61 | 1.862e-10 | 1.052 |
chr25:2676915 | rs311115 | - | G>C | 6942 | 18652 | 37.68 | 8.325e-10 | 1.094 |
chr25:155091176 | rs34445725 | - | C>A | 16252 | 49731 | 35.01 | 3.276e-09 | 0.9423 |
chr25:2677358 | rs66607823 | - | A>G | 9495 | 25919 | 33.84 | 5.99e-09 | 1.077 |
chr25:154974730 | rs144759332 | - | C>G | 2397 | 6098 | 33.08 | 8.851e-09 | 1.151 |
chr25:2682149 | rs311128 | - | C>T | 4711 | 12494 | 32.56 | 1.155e-08 | 1.105 |
chr25:2685254 | rs311142 | - | C>T | 32794 | 98414 | 32.02 | 1.528e-08 | 0.9551 |