Case | Control |
---|---|
95736 | 364458 |
An abnormality of the lower urinary tract. [HPO:probinson]
The lower urinary tract is a subdivision of urinary system which consists of the urinary bladder and the urethra.
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 4780 | 22746 | 189.0 | 5.36e-43 | 0.8017 |
chr15:48392165 | rs1834640 | - | A>G | 5623 | 26001 | 166.7 | 3.812e-38 | 0.8249 |
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 14327 | 48966 | 159.2 | 1.679e-36 | 1.132 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 12630 | 54428 | 148.7 | 3.413e-34 | 0.883 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 10661 | 46331 | 142.6 | 7.117e-33 | 0.8765 |
chr1:236085940 | rs12038310 | - | C>T | 2581 | 12695 | 135.0 | 3.309e-31 | 0.7773 |
chr6:170242949 | rs9396958 | - | T>C | 2742 | 13372 | 133.5 | 7.057e-31 | 0.784 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 13729 | 47363 | 129.3 | 5.817e-30 | 1.121 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 13906 | 48055 | 126.4 | 2.539e-29 | 1.119 |
chr2:3313043 | rs73133173 | EIPR1 | A>C | 2463 | 12000 | 118.6 | 1.265e-27 | 0.7851 |
chr15:45491394 | rs1648299 | SHF | T>C | 2981 | 14178 | 115.9 | 4.974e-27 | 0.804 |
chr5:54280007 | rs1508890 | ESM1 | C>A | 3226 | 15190 | 113.9 | 1.361e-26 | 0.812 |
chr9:140957557 | rs11137360 | CACNA1B | A>G | 3723 | 17283 | 113.6 | 1.556e-26 | 0.8235 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 3907 | 18036 | 112.5 | 2.738e-26 | 0.8279 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 3414 | 15963 | 112.4 | 2.976e-26 | 0.8176 |
chr23:128718936 | rs2362937 | OCRL | T>C | 3561 | 16390 | 112.4 | 2.95e-26 | 0.8203 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 17403 | 72705 | 111.4 | 4.876e-26 | 0.911 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 3193 | 14952 | 107.2 | 4.127e-25 | 0.8162 |
chr1:29783282 | rs6676357 | - | T>C | 1661 | 8393 | 106.7 | 5.106e-25 | 0.7575 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 2928 | 13812 | 104.9 | 1.288e-24 | 0.8109 |
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 13822 | 46780 | 158.2 | 2.775e-36 | 1.135 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 13176 | 44932 | 132.3 | 1.305e-30 | 1.125 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 13214 | 45076 | 131.2 | 2.236e-30 | 1.124 |
chr2:44074431 | rs4245791 | ABCG8 | T>C | 60621 | 237720 | 62.76 | 2.335e-15 | 0.9573 |
chr2:44073881 | rs6544713 | ABCG8 | C>T | 60039 | 235405 | 61.95 | 3.518e-15 | 0.9574 |
chr6:26472114 | rs9358945 | BTN2A1 | A>G | 35368 | 139441 | 42.63 | 6.621e-11 | 0.9578 |
chr6:26481642 | rs7756567 | - | T>G | 35367 | 139390 | 41.86 | 9.829e-11 | 0.9582 |
chr6:26478927 | rs9358946 | - | G>A | 35387 | 139460 | 41.82 | 9.99e-11 | 0.9582 |
chr6:26474044 | rs7773938 | BTN2A1 | C>T | 35311 | 139159 | 41.51 | 1.17e-10 | 0.9583 |
chr6:26495099 | rs2093169 | - | C>T | 35336 | 139211 | 41.42 | 1.229e-10 | 0.9584 |
chr6:26469875 | rs9358944 | BTN2A1 | A>C | 35357 | 139303 | 41.2 | 1.375e-10 | 0.9585 |
chr6:26474571 | rs56296968 | BTN2A1 | C>T | 35255 | 138920 | 41.04 | 1.492e-10 | 0.9585 |
chr17:36073320 | rs17138478 | HNF1B | C>A | 25381 | 92652 | 40.38 | 2.085e-10 | 1.05 |
chr2:44081042 | rs4077440 | ABCG8 | C>T | 82452 | 319667 | 40.14 | 2.368e-10 | 0.9676 |
chr6:26617306 | rs9393737 | - | G>A | 40100 | 157495 | 39.49 | 3.306e-10 | 0.9612 |
chr6:26467182 | rs3799380 | BTN2A1 | T>C | 37239 | 146451 | 39.25 | 3.734e-10 | 0.9603 |
chr6:26646521 | rs13195210 | ZNF322 | C>T | 39992 | 157018 | 39.0 | 4.236e-10 | 0.9614 |
chr6:26634040 | rs9295702 | - | T>C | 39754 | 156098 | 38.37 | 5.84e-10 | 0.9616 |
chr6:26663478 | rs7740197 | - | A>G | 40608 | 159367 | 38.25 | 6.229e-10 | 0.962 |
chr6:26638503 | rs148210763 | ZNF322 | G>A | 40027 | 157065 | 37.61 | 8.648e-10 | 0.9621 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 13822 | 13602 | 89.81 | 2.62e-21 | 1.126 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 13176 | 13095 | 71.17 | 3.28e-17 | 1.114 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 13214 | 13155 | 68.73 | 1.129e-16 | 1.111 |
chr2:44074431 | rs4245791 | ABCG8 | T>C | 60621 | 68833 | 51.32 | 7.852e-13 | 0.9527 |
chr2:44073881 | rs6544713 | ABCG8 | C>T | 60039 | 68146 | 49.37 | 2.116e-12 | 0.9534 |
chr4:81184341 | rs16998073 | - | A>T | 55401 | 62839 | 41.39 | 1.245e-10 | 0.9563 |
chr5:1322087 | rs401681 | CLPTM1L | C>T | 82813 | 93015 | 37.39 | 9.684e-10 | 0.9618 |
chr4:81164723 | rs1458038 | - | C>T | 54569 | 61778 | 36.7 | 1.379e-09 | 0.9585 |
chr5:1315660 | rs4975616 | - | A>G | 79556 | 89332 | 33.65 | 6.584e-09 | 0.9635 |
chr6:26481642 | rs7756567 | - | T>G | 35367 | 40347 | 32.71 | 1.067e-08 | 0.9548 |
chr6:26474044 | rs7773938 | BTN2A1 | C>T | 35311 | 40290 | 32.6 | 1.13e-08 | 0.9549 |
chr6:26472114 | rs9358945 | BTN2A1 | A>G | 35368 | 40344 | 32.4 | 1.255e-08 | 0.955 |
chr6:26478927 | rs9358946 | - | G>A | 35387 | 40359 | 32.34 | 1.291e-08 | 0.9551 |
chr15:91429176 | rs7497304 | FES | G>T | 61737 | 69609 | 32.19 | 1.401e-08 | 0.9625 |
chr6:26469875 | rs9358944 | BTN2A1 | A>C | 35357 | 40318 | 31.79 | 1.718e-08 | 0.9554 |
chr6:26495099 | rs2093169 | - | C>T | 35336 | 40273 | 31.37 | 2.132e-08 | 0.9557 |
chr5:1342714 | rs31489 | CLPTM1L | C>A | 77150 | 86596 | 31.2 | 2.333e-08 | 0.9647 |
chr6:26474571 | rs56296968 | BTN2A1 | C>T | 35255 | 40175 | 30.77 | 2.911e-08 | 0.9561 |
chr15:91428521 | rs11330240 | FES | CT>C | 62039 | 69865 | 28.92 | 7.544e-08 | 0.9644 |
chr2:44081042 | rs4077440 | ABCG8 | C>T | 82452 | 92324 | 28.82 | 7.959e-08 | 0.9663 |