Case | Control |
---|---|
77301 | 382893 |
An abnormality of the morphology or counts of the cells that make up the immune system. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:396321 | rs12203592 | IRF4 | C>T | 35531 | 165674 | 128.5 | 8.785e-30 | 1.078 |
chr6:421281 | rs62389423 | - | G>A | 28892 | 135144 | 89.93 | 2.462e-21 | 1.07 |
chr22:42448761 | rs5758563 | WBP2NL | G>T | 2089 | 12287 | 54.36 | 1.671e-13 | 0.8391 |
chr23:64367019 | rs7064929 | - | G>A | 3326 | 14240 | 53.27 | 2.91e-13 | 1.153 |
chr6:475489 | rs12210050 | - | C>T | 32634 | 155705 | 43.73 | 3.769e-11 | 1.046 |
chr2:26113913 | rs78404020 | - | A>G | 2034 | 11783 | 43.71 | 3.816e-11 | 0.8525 |
chr23:106146349 | rs5962774 | MORC4 | T>C | 2118 | 8908 | 42.69 | 6.418e-11 | 1.172 |
chr2:150445102 | rs4618014 | - | A>G | 2366 | 13473 | 40.46 | 2.008e-10 | 0.867 |
chr25:2609031 | rs149548031 | - | C>T | 1512 | 8901 | 39.55 | 3.194e-10 | 0.839 |
chr6:93667780 | rs9363020 | - | G>A | 1765 | 10226 | 38.03 | 6.982e-10 | 0.8524 |
chr3:24359753 | rs9835859 | THRB | T>C | 3201 | 14060 | 37.77 | 7.977e-10 | 1.129 |
chr23:148151708 | Affx-34694529 | - | A>C | 1708 | 7143 | 36.84 | 1.284e-09 | 1.179 |
chr23:75648551 | rs7066146 | MAGEE1 | A>C | 3104 | 13560 | 36.34 | 1.657e-09 | 1.129 |
chr20:19214390 | rs6136658 | SLC24A3 | G>A | 2041 | 11634 | 35.32 | 2.792e-09 | 0.8664 |
chr23:50844180 | rs4486337 | - | C>T | 2176 | 9314 | 34.66 | 3.932e-09 | 1.152 |
chr16:31088625 | rs749670 | ZNF646 | A>G | 59194 | 299052 | 34.08 | 5.279e-09 | 0.9676 |
chr4:156685655 | rs3796562 | GUCY1B1 | T>C | 2044 | 11612 | 33.89 | 5.823e-09 | 0.869 |
chr5:167170953 | rs13436693 | TENM2 | A>C | 17274 | 81604 | 33.79 | 6.148e-09 | 1.053 |
chr16:31075175 | rs2303223 | ZNF668 | G>A | 59239 | 299227 | 33.55 | 6.937e-09 | 0.9679 |
chr16:31107689 | Affx-12649457 | - | C>T | 59413 | 300068 | 33.47 | 7.238e-09 | 0.968 |
chr6:396321 | rs12203592 | IRF4 | C>T | 35122 | 163793 | 133.0 | 9.196e-31 | 1.08 |
chr6:421281 | rs62389423 | - | G>A | 28529 | 133336 | 96.12 | 1.079e-22 | 1.073 |
chr6:475489 | rs12210050 | - | C>T | 32230 | 153766 | 46.5 | 9.158e-12 | 1.048 |
chr6:31238495 | rs17884390 | HLA-C | G>A | 6724 | 36042 | 37.12 | 1.108e-09 | 0.9206 |
chr6:31275211 | rs28367687 | HLA-B | G>C | 6851 | 36658 | 36.63 | 1.431e-09 | 0.9217 |
chr6:31236289 | rs114472942 | - | C>A | 6671 | 35710 | 35.31 | 2.809e-09 | 0.9222 |
chr6:31408265 | rs2524276 | - | C>A | 10553 | 55547 | 35.24 | 2.909e-09 | 0.9368 |
chr6:31386019 | rs9295990 | - | T>G | 11585 | 60757 | 34.67 | 3.897e-09 | 0.9398 |
chr6:31418022 | rs2596457 | - | A>G | 11641 | 61043 | 34.61 | 4.022e-09 | 0.94 |
chr6:31234438 | rs28397309 | - | A>C | 6667 | 35649 | 34.53 | 4.197e-09 | 0.923 |
chr6:31425985 | rs2596480 | - | C>T | 11621 | 60941 | 34.49 | 4.278e-09 | 0.94 |
chr6:31237257 | rs17879162 | HLA-C | C>T | 6681 | 35711 | 34.22 | 4.91e-09 | 0.9234 |
chr6:31394700 | rs2516472 | - | A>G | 11604 | 60822 | 33.98 | 5.579e-09 | 0.9404 |
chr6:31253716 | rs28367592 | HLA-B | C>G | 6795 | 36279 | 33.9 | 5.79e-09 | 0.9243 |
chr6:31243495 | rs6913377 | HLA-B | G>A | 6762 | 36102 | 33.73 | 6.324e-09 | 0.9243 |
chr6:31230924 | rs7747738 | - | C>T | 6695 | 35751 | 33.54 | 6.967e-09 | 0.9242 |
chr6:31258141 | rs28367594 | HLA-B | G>A | 6797 | 36278 | 33.41 | 7.473e-09 | 0.9248 |
chr6:31259446 | rs28367596 | HLA-B | A>T | 6764 | 36104 | 33.32 | 7.809e-09 | 0.9248 |
chr6:31233651 | rs28397307 | - | G>A | 6666 | 35597 | 33.32 | 7.837e-09 | 0.9243 |
chr6:31237764 | Affx-52368559 | HLA-C | T>TAA | 6432 | 34390 | 33.29 | 7.945e-09 | 0.923 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr18:41021722 | rs591493 | - | T>C | 58850 | 14812 | 25.27 | 4.997e-07 | 1.06 |
chr6:396321 | rs12203592 | IRF4 | C>T | 35122 | 8732 | 20.32 | 6.544e-06 | 1.063 |
chr3:159295114 | rs1520697 | IQCJ-SCHIP1 | C>T | 13774 | 3887 | 20.17 | 7.096e-06 | 0.9178 |
chr2:38666134 | rs60895246 | - | C>T | 9154 | 2630 | 20.16 | 7.14e-06 | 0.9025 |
chr13:68610061 | rs9541268 | - | A>C | 18049 | 5039 | 20.05 | 7.55e-06 | 0.9266 |
chr16:89986117 | Affx-35293625 | MC1R | C>T | 16319 | 3953 | 19.7 | 9.072e-06 | 1.086 |
chr11:8234169 | rs59939588 | - | G>A | 31857 | 8715 | 19.11 | 1.235e-05 | 0.9421 |
chr10:4521422 | rs73596735 | - | G>A | 10182 | 2905 | 19.05 | 1.277e-05 | 0.9092 |
chr18:41040953 | rs2572272 | - | G>A | 33981 | 8464 | 18.83 | 1.427e-05 | 1.061 |
chr2:1842968 | Affx-36267613 | MYT1L | T>C | 50638 | 13666 | 18.76 | 1.482e-05 | 0.95 |
chr17:77240655 | rs8072027 | RBFOX3 | T>G | 6333 | 1848 | 18.74 | 1.5e-05 | 0.8896 |
chr16:89507330 | rs74836424 | ANKRD11 | C>T | 13074 | 3142 | 18.69 | 1.539e-05 | 1.094 |
chr4:14919332 | rs17381861 | - | C>T | 19768 | 5486 | 18.68 | 1.547e-05 | 0.9316 |
chr5:57446970 | rs2910573 | - | G>A | 11933 | 3374 | 18.61 | 1.6e-05 | 0.9159 |
chr5:57460746 | rs2216678 | - | C>T | 12876 | 3629 | 18.59 | 1.624e-05 | 0.9186 |
chr16:89687407 | rs2280374 | DPEP1 | C>T | 15811 | 3834 | 18.33 | 1.858e-05 | 1.084 |
chr16:90048395 | rs45610233 | - | C>T | 14453 | 3494 | 18.11 | 2.083e-05 | 1.088 |
chr21:29070385 | rs73183769 | - | G>A | 47146 | 11861 | 18.02 | 2.181e-05 | 1.054 |
chr16:90067184 | rs73283869 | - | G>A | 15163 | 3672 | 17.98 | 2.234e-05 | 1.085 |
chr4:19849441 | rs56004606 | - | T>C | 48114 | 12996 | 17.95 | 2.27e-05 | 0.9505 |