Case | Control |
---|---|
62105 | 398089 |
A morphological abnormality of a digit, i.e., of a finger or toe. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 2781 | 24745 | 259.5 | 2.226e-58 | 0.723 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 7667 | 59391 | 230.6 | 4.417e-52 | 0.8271 |
chr15:48392165 | rs1834640 | - | A>G | 3326 | 28298 | 228.1 | 1.529e-51 | 0.756 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 6495 | 50497 | 201.2 | 1.137e-45 | 0.8256 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 1711 | 15029 | 144.9 | 2.31e-33 | 0.7349 |
chr20:2315543 | rs6132532 | AL121899.2 | A>G | 5734 | 43800 | 143.2 | 5.218e-33 | 0.8422 |
chr5:54280007 | rs1508890 | ESM1 | C>A | 1923 | 16493 | 137.8 | 8.249e-32 | 0.7527 |
chr2:211717706 | rs12995612 | - | C>G | 1696 | 14776 | 135.9 | 2.107e-31 | 0.741 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 4721 | 36426 | 131.7 | 1.757e-30 | 0.8347 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 1905 | 16240 | 130.8 | 2.723e-30 | 0.7571 |
chr23:128718936 | rs2362937 | OCRL | T>C | 2199 | 17752 | 130.8 | 2.712e-30 | 0.7705 |
chr5:106908138 | rs163961 | EFNA5 | A>C | 3411 | 27157 | 130.7 | 2.863e-30 | 0.8104 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 4706 | 36274 | 130.0 | 4.086e-30 | 0.8355 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 10930 | 79178 | 127.6 | 1.34e-29 | 0.8865 |
chr6:170242949 | rs9396958 | - | T>C | 1670 | 14444 | 126.7 | 2.143e-29 | 0.7469 |
chr13:72441665 | rs3759505 | - | C>T | 1745 | 14970 | 125.0 | 5.141e-29 | 0.7529 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 2376 | 19567 | 124.4 | 6.941e-29 | 0.7835 |
chr4:111910180 | rs17042615 | - | C>T | 1677 | 14457 | 124.3 | 7.336e-29 | 0.7494 |
chr19:42392310 | rs2288509 | ARHGEF1 | C>T | 1846 | 15698 | 124.3 | 7.388e-29 | 0.7592 |
chr19:42391425 | rs28521795 | ARHGEF1 | G>A | 2003 | 16819 | 122.3 | 2.017e-28 | 0.769 |
chr7:114015707 | rs12705960 | FOXP2 | A>C | 61305 | 385827 | 33.27 | 8.042e-09 | 1.036 |
chr4:103188709 | rs13107325 | SLC39A8 | C>T | 9781 | 59083 | 31.98 | 1.556e-08 | 1.066 |
chr15:38907041 | rs7171171 | - | A>G | 24880 | 154103 | 31.28 | 2.23e-08 | 1.044 |
chr15:38902476 | rs17574546 | - | A>C | 24755 | 153348 | 31.07 | 2.486e-08 | 1.044 |
chr2:242207285 | rs59934670 | HDLBP | G>C | 23913 | 148051 | 30.68 | 3.039e-08 | 1.044 |
chr2:242302811 | rs3771550 | FARP2 | A>G | 23759 | 147206 | 28.95 | 7.438e-08 | 1.043 |
chr11:88378610 | rs61902889 | GRM5 | C>T | 22309 | 148029 | 28.81 | 7.999e-08 | 0.9583 |
chr4:102926923 | rs34592089 | BANK1 | G>A | 8091 | 48728 | 28.78 | 8.126e-08 | 1.069 |
chr20:34025756 | rs143384 | GDF5 | A>G | 49178 | 321598 | 28.25 | 1.065e-07 | 0.9674 |
chr15:38919964 | rs59659806 | - | T>C | 24736 | 153551 | 27.24 | 1.795e-07 | 1.041 |
chr3:35667761 | rs10490871 | - | A>G | 46057 | 289137 | 26.97 | 2.069e-07 | 1.033 |
chr15:38903824 | rs56331483 | - | A>G | 11481 | 70022 | 26.92 | 2.119e-07 | 1.056 |
chr20:34025983 | rs78110303 | GDF5 | A>G | 43927 | 287637 | 26.41 | 2.768e-07 | 0.9677 |
chr20:33971914 | rs4911494 | UQCC1 | T>C | 45066 | 294777 | 26.11 | 3.226e-07 | 0.9681 |
chr3:49899795 | rs3796386 | CAMKV | G>A | 53642 | 337719 | 26.08 | 3.278e-07 | 1.032 |
chr20:33972899 | rs4911179 | UQCC1 | C>A | 45059 | 294766 | 25.82 | 3.757e-07 | 0.9683 |
chr7:2078981 | rs56226325 | MAD1L1 | C>T | 18656 | 124033 | 25.66 | 4.063e-07 | 0.9577 |
chr20:33975181 | rs6088813 | UQCC1 | A>C | 45082 | 294939 | 25.47 | 4.488e-07 | 0.9685 |
chr20:33907161 | rs6060369 | UQCC1 | T>C | 45143 | 295284 | 25.21 | 5.136e-07 | 0.9687 |
chr20:33914208 | rs6060373 | UQCC1 | A>G | 45210 | 295700 | 25.08 | 5.487e-07 | 0.9688 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr17:45825384 | rs117549066 | - | A>G | 6314 | 6354 | 23.02 | 1.605e-06 | 1.091 |
chr6:10333718 | rs73418432 | - | G>A | 8726 | 8903 | 22.97 | 1.644e-06 | 1.078 |
chr9:2147041 | rs76007998 | SMARCA2 | T>G | 5487 | 6530 | 22.46 | 2.147e-06 | 0.915 |
chr6:486193 | rs12952 | EXOC2 | A>G | 30593 | 34526 | 21.44 | 3.657e-06 | 0.9588 |
chr21:40554520 | rs117689961 | PSMG1 | T>G | 1595 | 1484 | 20.26 | 6.757e-06 | 1.177 |
chr1:169566827 | rs3766122 | SELP | T>C | 5730 | 5777 | 19.92 | 8.089e-06 | 1.089 |
chr1:171141286 | rs61814305 | - | C>T | 5983 | 7059 | 19.64 | 9.327e-06 | 0.9232 |
chr6:70828336 | rs3806033 | COL19A1 | T>C | 51526 | 55184 | 19.61 | 9.515e-06 | 1.036 |
chr10:126482849 | rs11245366 | - | T>C | 53659 | 57541 | 19.29 | 1.126e-05 | 1.035 |
chr3:148467512 | rs73160716 | - | C>T | 3146 | 3084 | 19.09 | 1.246e-05 | 1.119 |
chr18:29690426 | rs11663563 | RNF138 | A>G | 53836 | 60050 | 19.09 | 1.244e-05 | 0.9648 |
chr15:38919964 | rs59659806 | - | T>C | 24736 | 26134 | 18.97 | 1.328e-05 | 1.044 |
chr10:13564299 | rs80325580 | BEND7 | T>C | 3479 | 4199 | 18.94 | 1.346e-05 | 0.9037 |
chr15:38903824 | rs56331483 | - | A>G | 11481 | 11894 | 18.69 | 1.539e-05 | 1.061 |
chr3:108451173 | rs114435085 | - | C>T | 2899 | 2833 | 18.57 | 1.634e-05 | 1.122 |
chr12:128156784 | rs2036468 | - | T>C | 1609 | 1509 | 18.57 | 1.636e-05 | 1.168 |
chr15:38907041 | rs7171171 | - | A>G | 24880 | 26294 | 18.51 | 1.687e-05 | 1.043 |
chr15:38902476 | rs17574546 | - | A>C | 24755 | 26165 | 18.48 | 1.717e-05 | 1.043 |
chr1:55781281 | rs207154 | - | T>C | 11586 | 12012 | 18.23 | 1.96e-05 | 1.06 |
chr18:29734467 | rs62095588 | GAREM1 | G>A | 50800 | 56659 | 18.05 | 2.153e-05 | 0.9667 |