Case | Control |
---|---|
95199 | 364995 |
Neoplasm categorized according to type of histological abnormality. [DDD:rscott]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr23:64367019 | rs7064929 | - | G>A | 4615 | 12951 | 245.4 | 2.63e-55 | 1.312 |
chr23:106146349 | rs5962774 | MORC4 | T>C | 3029 | 7997 | 238.3 | 9.037e-54 | 1.392 |
chr3:38051211 | rs75495843 | PLCD1 | G>A | 6896 | 22112 | 174.9 | 6.443e-40 | 1.203 |
chr6:396321 | rs12203592 | IRF4 | C>T | 43659 | 157546 | 162.4 | 3.362e-37 | 1.081 |
chr23:63423664 | rs5964740 | AMER1 | C>T | 5966 | 18134 | 158.8 | 2.111e-36 | 1.211 |
chr23:63410110 | rs61730681 | AMER1 | T>C | 5966 | 18167 | 156.0 | 8.484e-36 | 1.209 |
chr23:110722596 | rs73549358 | - | C>T | 3660 | 10595 | 151.8 | 6.905e-35 | 1.269 |
chr23:142717383 | rs73577386 | SLITRK4 | A>G | 2073 | 5549 | 148.8 | 3.112e-34 | 1.37 |
chr23:32716110 | rs1800265 | DMD | C>T | 2290 | 6255 | 145.4 | 1.783e-33 | 1.344 |
chr23:110685534 | rs16986503 | - | C>T | 3224 | 9259 | 142.2 | 8.658e-33 | 1.278 |
chr23:53347028 | rs1547218 | IQSEC2 | T>C | 9372 | 29881 | 141.5 | 1.245e-32 | 1.156 |
chr23:148151708 | Affx-34694529 | - | A>C | 2354 | 6497 | 139.2 | 4.017e-32 | 1.33 |
chr23:109671384 | rs768312 | AMMECR1 | T>C | 3955 | 11684 | 137.6 | 8.967e-32 | 1.244 |
chr10:105676465 | rs9420907 | STN1 | A>C | 29569 | 105681 | 135.9 | 2.079e-31 | 1.086 |
chr23:55985953 | rs7885685 | - | A>G | 7259 | 22812 | 131.6 | 1.794e-30 | 1.171 |
chr23:110414666 | rs57204200 | PAK3 | C>T | 4936 | 15030 | 128.2 | 1.033e-29 | 1.207 |
chr10:105657316 | rs10786775 | STN1 | C>G | 21234 | 74945 | 127.4 | 1.532e-29 | 1.097 |
chr23:153733911 | rs5986987 | - | C>G | 2932 | 8449 | 125.7 | 3.514e-29 | 1.274 |
chr10:105659826 | rs2487999 | STN1 | C>T | 21192 | 74884 | 124.9 | 5.413e-29 | 1.096 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 4350 | 13795 | 123.0 | 1.364e-28 | 1.215 |
chr3:38051211 | rs75495843 | PLCD1 | G>A | 6632 | 21225 | 170.6 | 5.43e-39 | 1.205 |
chr6:396321 | rs12203592 | IRF4 | C>T | 43139 | 155776 | 156.3 | 7.402e-36 | 1.08 |
chr6:421281 | rs62389423 | - | G>A | 34888 | 126977 | 90.98 | 1.45e-21 | 1.066 |
chr10:105631657 | rs35623220 | - | C>T | 21137 | 75853 | 81.56 | 1.705e-19 | 1.077 |
chr10:105657316 | rs10786775 | STN1 | C>G | 19186 | 68798 | 74.06 | 7.588e-18 | 1.077 |
chr10:105659826 | rs2487999 | STN1 | C>T | 19153 | 68745 | 72.73 | 1.486e-17 | 1.076 |
chr10:105676465 | rs9420907 | STN1 | A>C | 26105 | 94781 | 70.73 | 4.1e-17 | 1.065 |
chr10:105677897 | rs4387287 | STN1 | C>A | 30943 | 113184 | 64.25 | 1.096e-15 | 1.058 |
chr5:1286516 | rs2736100 | TERT | C>A | 92942 | 363729 | 61.92 | 3.572e-15 | 0.9602 |
chr3:169492101 | rs10936599 | MYNN | C>T | 45148 | 178991 | 53.4 | 2.717e-13 | 0.9568 |
chr3:169497585 | rs1317082 | MYNN | A>G | 45144 | 178978 | 53.12 | 3.144e-13 | 0.9569 |
chr5:1282319 | rs7726159 | TERT | C>A | 63404 | 237132 | 46.54 | 8.969e-12 | 1.038 |
chr3:169481271 | rs12696304 | - | C>G | 49071 | 193718 | 44.79 | 2.189e-11 | 0.9614 |
chr3:37887360 | rs6794868 | - | G>A | 31480 | 116126 | 44.36 | 2.737e-11 | 1.047 |
chr5:1287194 | rs2853677 | TERT | A>G | 81687 | 307074 | 43.52 | 4.201e-11 | 1.035 |
chr3:37999745 | rs7629707 | CTDSPL | G>A | 14831 | 53615 | 43.26 | 4.793e-11 | 1.066 |
chr3:169579971 | rs1920116 | LRRC31 | G>A | 51185 | 201757 | 42.83 | 5.957e-11 | 0.9628 |
chr3:169518455 | rs6793295 | LRRC34 | T>C | 48237 | 190200 | 41.3 | 1.306e-10 | 0.9626 |
chr16:89986117 | Affx-35293625 | MC1R | C>T | 20227 | 73964 | 39.96 | 2.591e-10 | 1.054 |
chr16:89818732 | rs12931267 | FANCA | C>G | 19997 | 73098 | 39.64 | 3.048e-10 | 1.055 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr3:38051211 | rs75495843 | PLCD1 | G>A | 6632 | 6619 | 124.7 | 6.063e-29 | 1.218 |
chr5:1286516 | rs2736100 | TERT | C>A | 92942 | 114789 | 51.57 | 6.92e-13 | 0.9564 |
chr10:105631657 | rs35623220 | - | C>T | 21137 | 24011 | 47.35 | 5.94e-12 | 1.071 |
chr6:396321 | rs12203592 | IRF4 | C>T | 43139 | 50112 | 46.47 | 9.323e-12 | 1.052 |
chr10:105676465 | rs9420907 | STN1 | A>C | 26105 | 29977 | 41.47 | 1.199e-10 | 1.06 |
chr10:105657316 | rs10786775 | STN1 | C>G | 19186 | 21829 | 39.82 | 2.784e-10 | 1.068 |
chr10:105659826 | rs2487999 | STN1 | C>T | 19153 | 21812 | 38.99 | 4.262e-10 | 1.067 |
chr16:90027626 | rs8063761 | DEF8 | A>T | 66649 | 78434 | 36.67 | 1.399e-09 | 1.04 |
chr10:105677897 | rs4387287 | STN1 | C>A | 30943 | 35804 | 36.26 | 1.731e-09 | 1.052 |
chr5:1282319 | rs7726159 | TERT | C>A | 63404 | 74599 | 35.01 | 3.287e-09 | 1.04 |
chr16:90024202 | rs8049897 | DEF8 | G>A | 33348 | 38714 | 33.97 | 5.601e-09 | 1.049 |
chr16:90067184 | rs73283869 | - | G>A | 18829 | 21547 | 32.26 | 1.351e-08 | 1.061 |
chr16:90066936 | rs4785763 | - | C>A | 68700 | 81027 | 31.86 | 1.66e-08 | 1.037 |
chr16:90067136 | rs78800020 | - | G>C | 18930 | 21668 | 31.81 | 1.696e-08 | 1.061 |
chr16:89818732 | rs12931267 | FANCA | C>G | 19997 | 22929 | 31.71 | 1.791e-08 | 1.059 |
chr16:89986117 | Affx-35293625 | MC1R | C>T | 20227 | 23225 | 30.9 | 2.717e-08 | 1.058 |
chr5:1287194 | rs2853677 | TERT | A>G | 81687 | 96667 | 30.76 | 2.918e-08 | 1.035 |
chr3:37999745 | rs7629707 | CTDSPL | G>A | 14831 | 16867 | 30.38 | 3.55e-08 | 1.067 |
chr3:37887360 | rs6794868 | - | G>A | 31480 | 36604 | 28.82 | 7.955e-08 | 1.046 |
chr3:37996268 | rs11919078 | CTDSPL | G>A | 26440 | 30630 | 28.45 | 9.595e-08 | 1.049 |