Case | Control |
---|---|
117714 | 342480 |
A structural abnormality of a skeletal muscle. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 6209 | 21317 | 130.2 | 3.671e-30 | 0.8466 |
chr24:14850341 | rs2032598 | USP9Y | T>C | 466 | 2346 | 126.1 | 2.98e-29 | 0.5685 |
chr6:170242949 | rs9396958 | - | T>C | 3579 | 12535 | 93.96 | 3.221e-22 | 0.8312 |
chr2:26113913 | rs78404020 | - | A>G | 3054 | 10763 | 85.75 | 2.047e-20 | 0.8263 |
chr5:106908138 | rs163961 | EFNA5 | A>C | 7105 | 23463 | 85.14 | 2.773e-20 | 0.8809 |
chr1:29783282 | rs6676357 | - | T>C | 2165 | 7889 | 84.69 | 3.49e-20 | 0.7994 |
chr15:48392165 | rs1834640 | - | A>G | 7372 | 24252 | 83.48 | 6.434e-20 | 0.884 |
chr6:22050187 | rs1736507 | - | C>A | 3230 | 11283 | 82.82 | 8.994e-20 | 0.8331 |
chr6:39737813 | rs458330 | - | G>A | 3186 | 11112 | 79.75 | 4.259e-19 | 0.8349 |
chr24:6941218 | rs9306845 | TBL1Y | A>G | 2263 | 8015 | 79.62 | 4.548e-19 | 0.8053 |
chr24:2756471 | rs9785784 | RPS4Y1 | T>A | 2257 | 7991 | 79.07 | 6.001e-19 | 0.8057 |
chr24:21778998 | rs9306841 | - | C>G | 2112 | 7505 | 76.51 | 2.194e-18 | 0.8031 |
chr24:22918577 | rs16980548 | RPS4Y2 | C>T | 2121 | 7531 | 76.24 | 2.507e-18 | 0.8037 |
chr24:21618583 | rs16980574 | - | G>C | 2127 | 7521 | 73.34 | 1.093e-17 | 0.8072 |
chr24:14060308 | rs16980621 | - | A>C | 2093 | 7401 | 72.21 | 1.939e-17 | 0.8072 |
chr24:17394111 | rs9785940 | - | C>G | 2082 | 7361 | 71.65 | 2.566e-17 | 0.8075 |
chr4:100239319 | rs1229984 | ADH1B | C>T | 7159 | 23317 | 67.72 | 1.883e-16 | 0.8933 |
chr6:170602429 | rs17860704 | DLL1 | T>C | 2604 | 9114 | 67.58 | 2.025e-16 | 0.8324 |
chr11:44843134 | rs11038167 | TSPAN18 | A>C | 2303 | 8146 | 67.18 | 2.482e-16 | 0.8236 |
chr5:177915428 | rs7730172 | COL23A1 | C>T | 3818 | 12940 | 66.85 | 2.929e-16 | 0.8593 |
chr22:46362396 | rs9330811 | WNT7B | G>A | 99896 | 296166 | 45.89 | 1.252e-11 | 0.9678 |
chr22:46381234 | rs62228062 | - | A>G | 61743 | 175036 | 41.37 | 1.262e-10 | 1.036 |
chr8:73889320 | rs9298210 | - | A>C | 109663 | 323857 | 33.57 | 6.862e-09 | 0.9726 |
chr9:128721295 | rs7867968 | PBX3 | T>C | 72237 | 214446 | 31.97 | 1.562e-08 | 0.9712 |
chr1:174516366 | rs10912807 | RABGAP1L | T>C | 107583 | 317758 | 31.42 | 2.081e-08 | 0.9734 |
chr3:77566573 | rs9839344 | ROBO2 | G>A | 70453 | 200830 | 30.78 | 2.889e-08 | 1.029 |
chr6:396321 | rs12203592 | IRF4 | C>T | 51822 | 147093 | 29.56 | 5.418e-08 | 1.032 |
chr3:50129399 | Affx-22412948 | RBM6 | C>T | 111070 | 327552 | 29.53 | 5.497e-08 | 0.9743 |
chr3:50207227 | rs3774749 | SEMA3F | C>T | 107865 | 318199 | 29.32 | 6.142e-08 | 0.9744 |
chr1:244360130 | rs12131440 | - | C>A | 39829 | 112597 | 29.24 | 6.381e-08 | 1.035 |
chr1:244365010 | rs72765836 | - | C>T | 43741 | 123857 | 29.2 | 6.536e-08 | 1.034 |
chr10:100016196 | rs1983867 | LOXL4 | G>C | 100879 | 297863 | 28.74 | 8.278e-08 | 0.9744 |
chr10:106625972 | rs2932556 | SORCS3 | T>C | 55129 | 156720 | 28.7 | 8.472e-08 | 1.031 |
chr18:45375152 | rs112826329 | SMAD2 | C>T | 3475 | 11181 | 27.93 | 1.259e-07 | 0.9018 |
chr7:37987632 | rs2290221 | EPDR1 | G>A | 24699 | 69251 | 27.82 | 1.335e-07 | 1.042 |
chr10:100017453 | rs1983864 | LOXL4 | T>G | 78698 | 233017 | 27.67 | 1.44e-07 | 0.9737 |
chr9:128487082 | rs7018617 | - | T>G | 85485 | 252854 | 27.18 | 1.851e-07 | 0.9744 |
chr9:128746044 | rs7868608 | - | G>A | 66700 | 197946 | 26.99 | 2.048e-07 | 0.9729 |
chr20:59040427 | rs35901992 | - | C>T | 51905 | 147529 | 26.89 | 2.155e-07 | 1.03 |
chr8:129981358 | rs11997787 | - | C>T | 100134 | 287132 | 26.79 | 2.264e-07 | 1.025 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 6209 | 1890 | 72.73 | 1.489e-17 | 0.7969 |
chr13:72441665 | rs3759505 | - | C>T | 3871 | 1212 | 58.27 | 2.283e-14 | 0.7764 |
chr15:48392165 | rs1834640 | - | A>G | 7372 | 2155 | 56.07 | 7.009e-14 | 0.83 |
chr6:170242949 | rs9396958 | - | T>C | 3579 | 1114 | 51.07 | 8.891e-13 | 0.7813 |
chr12:3417813 | rs729914 | - | G>T | 3736 | 1156 | 50.56 | 1.154e-12 | 0.7859 |
chr24:14850341 | rs2032598 | USP9Y | T>C | 466 | 168 | 47.62 | 5.175e-12 | 0.5403 |
chr9:135352751 | rs11243789 | CFAP77 | G>A | 3564 | 1095 | 45.41 | 1.599e-11 | 0.7911 |
chr2:237204719 | rs12329199 | - | C>T | 2505 | 800 | 44.49 | 2.555e-11 | 0.762 |
chr2:237222746 | rs60984264 | - | G>A | 4624 | 1380 | 43.85 | 3.539e-11 | 0.8146 |
chr9:140957557 | rs11137360 | CACNA1B | A>G | 5043 | 1493 | 43.84 | 3.57e-11 | 0.8211 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 16275 | 4424 | 43.33 | 4.63e-11 | 0.8907 |
chr8:34790660 | rs6982495 | - | C>T | 4916 | 1455 | 42.7 | 6.394e-11 | 0.8212 |
chr5:106908138 | rs163961 | EFNA5 | A>C | 7105 | 2040 | 42.28 | 7.917e-11 | 0.8471 |
chr13:49158025 | rs9591182 | RB1 | A>G | 6153 | 1783 | 41.78 | 1.023e-10 | 0.8385 |
chr19:42392441 | rs16975619 | ARHGEF1 | T>C | 4779 | 1414 | 41.15 | 1.408e-10 | 0.8219 |
chr8:16105860 | rs10888117 | MSR1 | C>A | 6417 | 1850 | 41.02 | 1.505e-10 | 0.8425 |
chr18:40401519 | rs57372542 | RIT2 | C>T | 3835 | 1158 | 40.96 | 1.551e-10 | 0.8056 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 13801 | 3776 | 40.94 | 1.57e-10 | 0.8859 |
chr9:127267689 | rs3814134 | NR5A1 | A>G | 6944 | 1990 | 40.89 | 1.607e-10 | 0.8478 |
chr6:39737813 | rs458330 | - | G>A | 3186 | 979 | 40.22 | 2.269e-10 | 0.7921 |
chr7:38003792 | rs2598084 | SFRP4 | C>G | 39538 | 9079 | 24.19 | 8.728e-07 | 1.065 |
chr11:10368960 | rs72852839 | AMPD3 | T>C | 6323 | 1728 | 20.53 | 5.864e-06 | 0.8827 |
chr5:76117374 | rs2243005 | F2RL1 | T>C | 14932 | 3328 | 19.95 | 7.933e-06 | 1.092 |
chr6:118665981 | rs116902152 | - | G>A | 2401 | 703 | 19.86 | 8.335e-06 | 0.8253 |
chr11:32364187 | rs2057178 | - | G>A | 36437 | 9253 | 19.81 | 8.552e-06 | 0.945 |
chr12:10023591 | rs4270003 | - | A>C | 42130 | 9755 | 19.63 | 9.41e-06 | 1.056 |
chr8:138338652 | rs6985925 | - | C>T | 46674 | 10840 | 19.32 | 1.104e-05 | 1.054 |
chr7:37987632 | rs2290221 | EPDR1 | G>A | 24699 | 5626 | 19.21 | 1.171e-05 | 1.071 |
chr4:175801224 | rs17300686 | ADAM29 | C>T | 18290 | 4740 | 18.72 | 1.512e-05 | 0.929 |
chr10:122769159 | rs12412166 | - | C>T | 9503 | 2078 | 18.62 | 1.599e-05 | 1.112 |
chr5:41437801 | rs318058 | PLCXD3 | T>C | 17863 | 4631 | 18.55 | 1.652e-05 | 0.9286 |
chr4:55946671 | rs11936206 | KDR | G>A | 8351 | 1813 | 18.51 | 1.688e-05 | 1.12 |
chr5:25854147 | rs78505168 | - | G>A | 11510 | 2544 | 18.49 | 1.712e-05 | 1.101 |
chr12:95931697 | rs7316331 | USP44 | T>C | 33643 | 7748 | 18.47 | 1.722e-05 | 1.06 |
chr7:38026155 | rs118028828 | SFRP4 | A>G | 22893 | 5209 | 18.36 | 1.83e-05 | 1.072 |
chr23:77474739 | rs185163037 | - | C>T | 3831 | 838 | 18.13 | 2.06e-05 | 1.178 |
chr18:75537158 | rs117835771 | - | C>T | 9185 | 2445 | 17.97 | 2.24e-05 | 0.9062 |
chr22:46381234 | rs62228062 | - | A>G | 61743 | 14459 | 17.89 | 2.338e-05 | 1.046 |
chr16:15253672 | rs112528874 | - | G>A | 6405 | 1735 | 17.72 | 2.561e-05 | 0.8908 |
chr23:142601441 | rs6529146 | SPANXN3 | A>C | 80916 | 20273 | 17.7 | 2.584e-05 | 1.045 |