Case | Control |
---|---|
35552 | 424642 |
Any structural anomaly of the kidney. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 1841 | 25685 | 42.02 | 9.02e-11 | 0.8537 |
chr5:176798306 | rs11746443 | RGS14 | G>A | 19903 | 228759 | 38.74 | 4.84e-10 | 1.055 |
chr10:108672251 | rs1572457 | SORCS1 | C>T | 728 | 10990 | 37.64 | 8.51e-10 | 0.7902 |
chr15:48392165 | rs1834640 | - | A>G | 2157 | 29467 | 36.75 | 1.341e-09 | 0.8719 |
chr7:113052230 | rs28397921 | - | C>T | 1948 | 26595 | 32.74 | 1.053e-08 | 0.8728 |
chr5:176784512 | rs4075958 | - | G>A | 20110 | 232127 | 31.55 | 1.94e-08 | 1.049 |
chr9:91984164 | rs11507706 | SEMA4D | G>A | 6511 | 72775 | 30.48 | 3.371e-08 | 1.078 |
chr11:68851414 | rs2376558 | TPCN2 | C>T | 947 | 13581 | 29.71 | 5.019e-08 | 0.8318 |
chr7:113102172 | rs12705876 | - | T>C | 1431 | 19811 | 29.2 | 6.526e-08 | 0.8614 |
chr6:22050187 | rs1736507 | - | C>A | 948 | 13565 | 29.01 | 7.208e-08 | 0.8337 |
chr6:396321 | rs12203592 | IRF4 | C>T | 16101 | 185104 | 28.92 | 7.553e-08 | 1.051 |
chr7:113116165 | rs12537382 | - | T>C | 1388 | 19217 | 28.54 | 9.156e-08 | 0.8609 |
chr25:2645366 | rs311083 | - | C>G | 28267 | 329555 | 28.06 | 1.176e-07 | 1.043 |
chr11:68817229 | rs4930259 | TPCN2 | T>C | 1164 | 16319 | 27.83 | 1.327e-07 | 0.8512 |
chr24:14850341 | rs2032598 | USP9Y | T>C | 177 | 2635 | 27.13 | 1.905e-07 | 0.668 |
chr13:113979968 | rs200506581 | GRTP1 | C>CCACA | 829 | 11897 | 26.08 | 3.271e-07 | 0.8317 |
chr22:41900439 | rs5751117 | ACO2 | A>G | 1043 | 14667 | 26.03 | 3.367e-07 | 0.8483 |
chr1:246018517 | rs9662940 | SMYD3 | C>T | 19254 | 237972 | 25.95 | 3.503e-07 | 0.9567 |
chr7:9223595 | rs7796895 | - | A>G | 23968 | 294587 | 25.85 | 3.685e-07 | 0.9594 |
chr13:113979972 | Affx-80297025 | GRTP1 | A>ACACT | 829 | 11878 | 25.65 | 4.103e-07 | 0.833 |
chr5:176798306 | rs11746443 | RGS14 | G>A | 19073 | 219347 | 33.76 | 6.223e-09 | 1.053 |
chr5:176784512 | rs4075958 | - | G>A | 19252 | 222336 | 27.28 | 1.758e-07 | 1.047 |
chr9:91984164 | rs11507706 | SEMA4D | G>A | 6396 | 71651 | 27.02 | 2.014e-07 | 1.074 |
chr25:2645366 | rs311083 | - | C>G | 26613 | 309943 | 25.7 | 3.99e-07 | 1.042 |
chr7:9223595 | rs7796895 | - | A>G | 22858 | 280673 | 25.56 | 4.293e-07 | 0.9586 |
chr6:396321 | rs12203592 | IRF4 | C>T | 15898 | 183017 | 25.12 | 5.379e-07 | 1.048 |
chr5:176794191 | rs12654812 | RGS14 | G>A | 24860 | 289309 | 23.65 | 1.153e-06 | 1.041 |
chr5:176806636 | rs35716097 | SLC34A1 | C>T | 21733 | 252314 | 23.52 | 1.239e-06 | 1.042 |
chr5:18393530 | rs1918343 | - | G>A | 5350 | 59736 | 23.44 | 1.288e-06 | 1.074 |
chr5:22046454 | rs62349098 | CDH12 | T>C | 699 | 10069 | 23.32 | 1.372e-06 | 0.8273 |
chr22:37961091 | rs62235032 | CDC42EP1 | G>A | 6973 | 78703 | 22.61 | 1.979e-06 | 1.065 |
chr5:176784612 | rs4075959 | - | G>A | 20699 | 240084 | 22.59 | 2.008e-06 | 1.042 |
chr3:193596813 | rs1165651 | - | T>C | 26742 | 326818 | 21.66 | 3.257e-06 | 0.9632 |
chr24:14902414 | rs20321 | USP9Y | G>A | 962 | 8192 | 21.5 | 3.546e-06 | 1.176 |
chr3:105687771 | rs73190055 | - | C>T | 1901 | 25319 | 21.49 | 3.551e-06 | 0.8943 |
chr8:139302266 | rs78340141 | FAM135B | G>A | 2056 | 22112 | 21.31 | 3.903e-06 | 1.114 |
chr6:25918225 | rs80215559 | SLC17A2 | T>C | 5695 | 64000 | 21.07 | 4.434e-06 | 1.068 |
chr6:114205234 | rs10499077 | - | A>C | 7550 | 94913 | 20.46 | 6.088e-06 | 0.9444 |
chr3:186648117 | rs1468906 | - | A>G | 25047 | 292101 | 20.38 | 6.341e-06 | 1.038 |
chr6:124996466 | rs1304941 | NKAIN2 | C>T | 11531 | 132331 | 20.28 | 6.695e-06 | 1.049 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr20:47468913 | rs73609696 | - | A>C | 9730 | 32364 | 33.16 | 8.469e-09 | 1.074 |
chr20:47423563 | rs6012536 | PREX1 | A>G | 14419 | 48818 | 27.31 | 1.731e-07 | 1.057 |
chr22:35382268 | rs35433006 | - | C>A | 32167 | 111181 | 25.51 | 4.401e-07 | 1.044 |
chr6:30069795 | rs1108052 | - | A>C | 19056 | 65152 | 25.28 | 4.959e-07 | 1.05 |
chr6:30065416 | rs1264703 | - | C>G | 18813 | 64261 | 24.47 | 7.566e-07 | 1.049 |
chr1:90863731 | rs7519598 | - | G>A | 8553 | 28600 | 24.33 | 8.129e-07 | 1.067 |
chr5:176798306 | rs11746443 | RGS14 | G>A | 19073 | 65198 | 24.09 | 9.191e-07 | 1.048 |
chr6:30067892 | rs1264695 | - | A>G | 19085 | 65255 | 23.81 | 1.062e-06 | 1.048 |
chr16:75313258 | rs8050367 | - | A>G | 18554 | 63405 | 23.64 | 1.164e-06 | 1.048 |
chr6:30067568 | rs1264697 | - | C>G | 18804 | 64269 | 23.55 | 1.214e-06 | 1.048 |
chr2:69506559 | rs114664486 | - | C>T | 1228 | 3716 | 23.39 | 1.319e-06 | 1.174 |
chr16:20410547 | rs9926580 | PDILT | C>T | 20178 | 69137 | 23.24 | 1.432e-06 | 1.047 |
chr6:30065575 | rs1264702 | - | T>C | 18759 | 64192 | 22.99 | 1.625e-06 | 1.047 |
chr24:14902414 | rs20321 | USP9Y | G>A | 962 | 2605 | 22.9 | 1.705e-06 | 1.203 |
chr16:20410488 | rs7185940 | PDILT | G>A | 20228 | 69299 | 22.86 | 1.747e-06 | 1.046 |
chr1:214271983 | rs79793739 | - | G>T | 5325 | 20235 | 22.83 | 1.77e-06 | 0.9263 |
chr15:47900177 | rs76594840 | SEMA6D | T>C | 5195 | 19721 | 22.02 | 2.695e-06 | 0.9268 |
chr16:20411763 | rs7192797 | PDILT | G>A | 20147 | 69120 | 21.65 | 3.27e-06 | 1.045 |
chr9:125983554 | rs12348258 | STRBP | C>T | 2873 | 9221 | 21.62 | 3.33e-06 | 1.107 |
chr4:110914427 | rs4698803 | EGF | T>A | 14533 | 53480 | 21.52 | 3.498e-06 | 0.9524 |