Non-Hodgkin lymphoma

0012539

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

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Sex Split

Interactive Plot

Statistics

Case	Control
4919	455275

Phenotype Definition

A type of lymphoma characterized microscopically by the absence of multinucleated Reed-Sternberg cells. [HPO:probinson]

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr6:32408500	rs116479312	HLA-DRA	T>G	267	18004	27.73	1.398e-07	1.388
chr6:31206206	rs3130685	-	C>T	4905	431338	24.47	7.55e-07	1.103
chr6:31206868	rs2894186	-	G>C	4525	396603	23.73	1.107e-06	1.102
chr6:32550580	rs35662241	HLA-DRB1	C>T	1259	102888	23.32	1.369e-06	1.158
chr6:32553626	rs113647600	HLA-DRB1	C>A	1350	110778	22.42	2.191e-06	1.149
chr6:32313659	Affx-28471757	TSBP1	G>A	564	43026	22.26	2.381e-06	1.228
chr2:61017705	rs17538421	PAPOLG	T>C	574	43903	22.09	2.597e-06	1.225
chr1:229507651	rs238096	-	T>C	4251	415886	21.92	2.837e-06	0.9104
chr6:32549638	rs72850244	HLA-DRB1	G>A	1347	110737	21.9	2.866e-06	1.147
chr6:30949670	rs2517425	-	T>G	3186	275545	21.6	3.354e-06	1.104
chr10:123033549	rs10788160	-	G>A	2747	235635	21.57	3.408e-06	1.109
chr6:32581889	rs4530903	-	C>T	1336	109856	21.51	3.522e-06	1.146
chr8:25247356	rs4626608	DOCK5	C>G	274	19311	21.3	3.922e-06	1.328
chr6:30957618	rs886403	MUC21	T>C	3127	270639	20.77	5.186e-06	1.103
chr6:32548469	rs3830133	HLA-DRB1	A>G	1355	111721	20.72	5.312e-06	1.143
chr10:123032519	rs11199874	-	G>A	2791	240074	20.59	5.695e-06	1.106
chr6:32542638	rs34451186	-	T>C	1346	111211	20.25	6.78e-06	1.141
chr6:32657436	rs3129716	-	T>C	1650	137985	20.21	6.928e-06	1.129
chr6:32590844	rs17533167	-	G>C	1334	110147	20.19	7.021e-06	1.142
chr6:31062667	rs2517448	-	C>T	3697	363547	20.1	7.353e-06	0.9118
chr6:32408500	rs116479312	HLA-DRA	T>G	251	16371	31.51	1.986e-08	1.433
chr6:31206206	rs3130685	-	C>T	4602	401240	28.82	7.946e-08	1.115
chr6:31206868	rs2894186	-	G>C	4299	374309	26.57	2.544e-07	1.111
chr6:31062667	rs2517448	-	C>T	3533	348485	22.75	1.848e-06	0.9041
chr15:71375818	rs75693070	-	C>T	364	42796	22.06	2.648e-06	0.7778
chr3:167276947	rs73029915	WDR49	C>A	290	20436	21.94	2.811e-06	1.323
chr6:32408735	rs3129878	HLA-DRA	A>C	3327	287630	21.93	2.822e-06	1.106
chr3:105005089	rs16851027	-	T>C	1414	116513	21.7	3.19e-06	1.144
chr6:32313659	Affx-28471757	TSBP1	G>A	559	42647	21.67	3.24e-06	1.226
chr6:31074030	rs6457327	-	C>A	3547	348556	21.49	3.565e-06	0.9067
chr5:178012176	rs262042	COL23A1	G>A	4778	462528	20.58	5.708e-06	0.9121
chr2:61017705	rs17538421	PAPOLG	T>C	563	43208	20.55	5.804e-06	1.219
chr3:111708058	rs774749	ABHD10	G>C	877	70252	20.07	7.473e-06	1.173
chr6:32550580	rs35662241	HLA-DRB1	C>T	1216	99966	20.04	7.594e-06	1.149
chr8:25247356	rs4626608	DOCK5	C>G	257	18119	19.81	8.542e-06	1.327
chr6:26149000	rs16891359	-	T>C	501	38128	19.76	8.784e-06	1.227
chr6:31116246	rs130068	CCHCR1	G>A	4340	383072	19.5	1.005e-05	1.096
chr6:32657436	rs3129716	-	T>C	1589	132636	19.5	1.005e-05	1.129
chr6:31021547	rs2517527	-	G>A	3549	347313	19.34	1.092e-05	0.9112
chr1:229507651	rs238096	-	T>C	3986	388651	19.26	1.139e-05	0.9133

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr12:32135186	rs3759302	RESF1	T>A	2019	341	24.14	8.954e-07	1.369
chr12:24526259	rs12313390	SOX5	C>T	730	227	23.48	1.263e-06	0.6799
chr11:95633284	rs17230594	MTMR2	T>C	253	97	23.34	1.356e-06	0.5592
chr6:32550580	rs35662241	HLA-DRB1	C>T	1216	185	23.23	1.438e-06	1.489
chr10:131253531	rs79811103	-	G>A	606	194	22.98	1.635e-06	0.6633
chr12:32134207	rs2388981	RESF1	C>A	2010	342	22.96	1.656e-06	1.358
chr11:95466389	rs77538670	-	A>C	249	95	22.58	2.013e-06	0.5615
chr6:32549638	rs72850244	HLA-DRB1	G>A	1301	205	22.23	2.42e-06	1.45
chr12:32137565	rs1057994	RESF1	G>A	2015	346	22.14	2.529e-06	1.349
chr18:66165437	rs79101020	-	T>G	506	165	22.03	2.68e-06	0.6481
chr2:149359948	rs7583200	-	T>C	726	224	21.99	2.741e-06	0.687
chr6:32665420	rs10484561	-	T>G	1291	205	20.92	4.795e-06	1.435
chr6:32581889	rs4530903	-	C>T	1289	205	20.66	5.474e-06	1.432
chr15:69972958	rs10518826	-	T>C	3420	857	20.63	5.565e-06	0.801
chr6:32590844	rs17533167	-	G>C	1287	204	20.28	6.703e-06	1.428
chr5:153762653	rs918509	GALNT10	C>T	2296	598	19.91	8.123e-06	0.787
chr6:32527079	rs28530648	-	A>C	1355	219	19.84	8.43e-06	1.408
chr6:32504136	rs66525318	-	C>A	1395	227	19.78	8.682e-06	1.4
chr5:29566499	rs112553617	-	A>G	167	68	19.61	9.478e-06	0.5295
chr8:40382006	rs1429962	-	T>C	3371	629	19.52	9.952e-06	1.258

Associated Diseases ^ⓘ

ID	Name	Top Correlation
ICD: C829	Follicular non-Hodgkin's lymphoma, unspecified	6/20
ICD: C851	B-cell lymphoma, unspecified	1/20
ICD: C859	Non-Hodgkin's lymphoma, unspecified type	1/20

ID	Name	Top Correlation
ICD-10: B49	Unspecified mycosis	0/20
ICD-10: C492	Connective and soft tissue of lower limb, including hip	0/20
ICD-10: C819	Hodgkin's disease, unspecified	0/20
ICD-10: C833	Large cell (diffuse)	0/20
ICD-10: C838	Other types of diffuse non-Hodgkin's lymphoma	0/20
ICD-10: C857	Other specified types of non-Hodgkin's lymphoma	0/20
ICD-10: D210	Connective and other soft tissue of head, face and neck	0/20
ICD-10: D211	Connective and other soft tissue of upper limb, including shoulder	0/20
ICD-10: D212	Connective and other soft tissue of lower limb, including hip	0/20
ICD-10: D481	Connective and other soft tissue	0/20
ICD-10: N645	Other signs and symptoms in breast	0/20

Non-Hodgkin lymphoma

0012539

Normal Case/Contol ⓘ

Sibling Case/Control ⓘ

Links

Statistics

Phenotype Definition

Top SNP Information Show Normal Table Show Sibling SNP

Associated Diseases ⓘ Shared SNP diseases No shared SNP diseases

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Top SNP Information

Associated Diseases ^ⓘ