Case | Control |
---|---|
155629 | 304565 |
Abnormal functionality of the gastrointestinal tract. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 8384 | 19142 | 136.3 | 1.685e-31 | 0.8565 |
chr15:48392165 | rs1834640 | - | A>G | 9774 | 21850 | 116.9 | 2.949e-27 | 0.8749 |
chr6:396321 | rs12203592 | IRF4 | C>T | 69950 | 131255 | 116.2 | 4.19e-27 | 1.059 |
chr6:421281 | rs62389423 | - | G>A | 56948 | 107088 | 85.01 | 2.966e-20 | 1.054 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 5945 | 13432 | 82.42 | 1.103e-19 | 0.8671 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 87979 | 178419 | 81.85 | 1.465e-19 | 0.9573 |
chr1:207782889 | rs17047661 | CR1 | A>G | 4338 | 9981 | 76.99 | 1.72e-18 | 0.8517 |
chr24:14850341 | rs2032598 | USP9Y | T>C | 733 | 2079 | 74.07 | 7.529e-18 | 0.6909 |
chr16:7465748 | rs4786166 | RBFOX1 | C>T | 5470 | 12324 | 72.84 | 1.405e-17 | 0.8696 |
chr11:68817229 | rs4930259 | TPCN2 | T>C | 5369 | 12114 | 72.63 | 1.566e-17 | 0.8686 |
chr5:64447660 | rs6879867 | ADAMTS6 | G>A | 3627 | 8410 | 70.78 | 3.985e-17 | 0.8454 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 5591 | 12554 | 70.74 | 4.077e-17 | 0.8725 |
chr9:129557967 | rs7863211 | - | G>A | 5933 | 13269 | 70.5 | 4.602e-17 | 0.8761 |
chr13:113979968 | rs200506581 | GRTP1 | C>CCACA | 3849 | 8877 | 70.19 | 5.39e-17 | 0.85 |
chr13:113979972 | Affx-80297025 | GRTP1 | A>ACACT | 3843 | 8864 | 70.17 | 5.443e-17 | 0.8499 |
chr16:29790864 | rs235636 | ZG16 | A>G | 3881 | 8940 | 69.77 | 6.648e-17 | 0.8509 |
chr2:135837906 | rs7570971 | RAB3GAP1 | C>A | 100602 | 202971 | 69.41 | 7.994e-17 | 0.9621 |
chr21:17639822 | rs183564 | - | C>T | 8695 | 18987 | 68.96 | 1.006e-16 | 0.8967 |
chr6:170242949 | rs9396958 | - | T>C | 4942 | 11172 | 68.6 | 1.206e-16 | 0.8672 |
chr16:80411204 | rs79700617 | - | C>G | 2936 | 6904 | 67.55 | 2.056e-16 | 0.8338 |
chr6:396321 | rs12203592 | IRF4 | C>T | 69149 | 129766 | 97.27 | 6.035e-23 | 1.054 |
chr6:421281 | rs62389423 | - | G>A | 56203 | 105662 | 71.62 | 2.614e-17 | 1.05 |
chr9:136149229 | rs505922 | ABO | T>C | 97210 | 194683 | 49.72 | 1.772e-12 | 0.9671 |
chr9:136137065 | rs687621 | ABO | A>G | 97507 | 195240 | 48.61 | 3.12e-12 | 0.9674 |
chr9:136142203 | rs514659 | ABO | A>C | 94322 | 188812 | 47.71 | 4.937e-12 | 0.9673 |
chr9:136143442 | rs612169 | ABO | A>G | 97686 | 195457 | 47.08 | 6.821e-12 | 0.968 |
chr9:136139265 | rs657152 | ABO | C>A | 104110 | 207861 | 43.03 | 5.398e-11 | 0.9699 |
chr9:136132908 | rs8176719 | ABO | T>TC | 104180 | 208103 | 42.23 | 8.118e-11 | 0.9701 |
chr19:49211969 | rs676388 | - | C>T | 143369 | 284874 | 41.83 | 9.956e-11 | 0.9718 |
chr9:136142355 | rs643434 | ABO | G>A | 104461 | 208563 | 41.71 | 1.056e-10 | 0.9703 |
chr6:475489 | rs12210050 | - | C>T | 64052 | 121944 | 39.96 | 2.593e-10 | 1.035 |
chr19:49214274 | rs281379 | - | A>G | 146531 | 291038 | 39.32 | 3.589e-10 | 0.9727 |
chr19:49209010 | rs503279 | FUT2 | C>T | 143083 | 284159 | 38.35 | 5.909e-10 | 0.973 |
chr19:49208865 | rs504963 | FUT2 | A>G | 143617 | 285114 | 37.75 | 8.058e-10 | 0.9732 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 74048 | 148412 | 36.85 | 1.277e-09 | 0.9692 |
chr19:49207206 | rs485186 | FUT2 | G>A | 142674 | 283223 | 36.5 | 1.527e-09 | 0.9736 |
chr19:49206985 | rs602662 | FUT2 | A>G | 142781 | 283515 | 36.23 | 1.754e-09 | 0.9737 |
chr19:49206417 | rs492602 | FUT2 | G>A | 151404 | 300321 | 35.54 | 2.501e-09 | 0.974 |
chr19:49206172 | rs516246 | FUT2 | T>C | 151659 | 300790 | 35.34 | 2.767e-09 | 0.9741 |
chr19:49206674 | rs601338 | FUT2 | A>G | 151215 | 299904 | 35.29 | 2.848e-09 | 0.9741 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr9:136137065 | rs687621 | ABO | A>G | 97507 | 37425 | 30.1 | 4.097e-08 | 0.9603 |
chr9:136149229 | rs505922 | ABO | T>C | 97210 | 37262 | 27.04 | 1.992e-07 | 0.9623 |
chr9:136142203 | rs514659 | ABO | A>C | 94322 | 36130 | 26.26 | 2.982e-07 | 0.9624 |
chr9:136143442 | rs612169 | ABO | A>G | 97686 | 37414 | 26.06 | 3.315e-07 | 0.9631 |
chr25:2677358 | rs66607823 | - | A>G | 31608 | 12403 | 25.17 | 5.256e-07 | 0.9454 |
chr6:167713792 | rs6907858 | UNC93A | T>C | 94438 | 34356 | 23.96 | 9.814e-07 | 1.038 |
chr13:106727115 | rs117642560 | - | T>C | 9960 | 4065 | 23.7 | 1.125e-06 | 0.912 |
chr10:25815417 | rs3923088 | GPR158 | A>G | 144327 | 52920 | 23.66 | 1.149e-06 | 1.034 |
chr4:103188709 | rs13107325 | SLC39A8 | C>T | 23862 | 8396 | 23.45 | 1.282e-06 | 1.066 |
chr3:12223413 | rs75719041 | SYN2 | T>C | 14109 | 5662 | 22.31 | 2.318e-06 | 0.9267 |
chr9:136149399 | rs507666 | ABO | G>A | 55907 | 21603 | 22.31 | 2.319e-06 | 0.959 |
chr9:136155000 | rs635634 | - | C>T | 55510 | 21441 | 22.13 | 2.543e-06 | 0.959 |
chr9:136139265 | rs657152 | ABO | C>A | 104110 | 39737 | 21.63 | 3.299e-06 | 0.9668 |
chr23:128857065 | rs4829706 | - | T>C | 50236 | 19174 | 21.56 | 3.425e-06 | 1.045 |
chr9:136132908 | rs8176719 | ABO | T>TC | 104180 | 39779 | 21.31 | 3.916e-06 | 0.967 |
chr6:29688501 | rs2517910 | - | C>A | 137960 | 52427 | 21.15 | 4.243e-06 | 0.9687 |
chr2:219669002 | rs6436090 | CYP27A1 | G>A | 151832 | 57585 | 20.92 | 4.801e-06 | 0.969 |
chr5:5318581 | rs6885895 | ADAMTS16 | A>C | 31116 | 11074 | 20.45 | 6.123e-06 | 1.054 |
chr2:119322077 | rs76896472 | - | G>A | 18360 | 6435 | 20.14 | 7.19e-06 | 1.069 |
chr9:136142355 | rs643434 | ABO | G>A | 104461 | 39849 | 20.11 | 7.305e-06 | 0.968 |