Case | Control |
---|---|
28067 | 432127 |
An anomaly of the neck of the uterus (lower part of the uterus), called the uterine cervix. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr25:2692710 | rs2259750 | - | A>G | 9950 | 172921 | 203.0 | 4.675e-46 | 0.8509 |
chr25:2679949 | rs311121 | - | G>T | 9611 | 130592 | 138.4 | 5.936e-32 | 1.145 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 2140 | 25386 | 128.0 | 1.125e-29 | 1.295 |
chr25:154974730 | rs144759332 | - | C>G | 2122 | 25264 | 123.4 | 1.135e-28 | 1.29 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 1465 | 16680 | 117.8 | 1.906e-27 | 1.348 |
chr15:48392165 | rs1834640 | - | A>G | 2402 | 29222 | 116.6 | 3.568e-27 | 1.263 |
chr25:154999134 | rs6642320 | - | G>A | 22385 | 322630 | 106.8 | 4.868e-25 | 1.096 |
chr25:154935282 | rs112437556 | - | C>T | 2216 | 27023 | 106.1 | 7.155e-25 | 1.261 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 1534 | 17843 | 105.9 | 7.756e-25 | 1.318 |
chr10:114925758 | rs1056877 | TCF7L2 | T>C | 1041 | 11410 | 105.6 | 8.907e-25 | 1.397 |
chr13:72441665 | rs3759505 | - | C>T | 1344 | 15371 | 104.1 | 1.895e-24 | 1.34 |
chr25:2661556 | rs73188900 | - | A>C | 798 | 17483 | 102.9 | 3.5e-24 | 0.6922 |
chr17:58508582 | rs8071181 | C17orf64 | G>A | 1243 | 14174 | 98.3 | 3.592e-23 | 1.343 |
chr25:155058865 | rs73234550 | - | G>A | 1458 | 28838 | 98.27 | 3.652e-23 | 0.7643 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 1696 | 20247 | 95.83 | 1.255e-22 | 1.284 |
chr25:2676160 | rs312232 | - | C>T | 14621 | 207053 | 95.31 | 1.625e-22 | 1.101 |
chr23:71628912 | rs3012642 | AL133500.1 | A>G | 2112 | 20612 | 94.1 | 2.994e-22 | 1.253 |
chr9:117110112 | Affx-52344420 | AKNA | T>TG | 1176 | 13403 | 93.25 | 4.617e-22 | 1.344 |
chr23:64367019 | rs7064929 | - | G>A | 1672 | 15894 | 92.72 | 6.011e-22 | 1.285 |
chr25:2691012 | rs142162416 | - | A>G | 2988 | 38116 | 92.51 | 6.707e-22 | 1.206 |
chr25:2692710 | rs2259750 | - | A>G | 9183 | 159419 | 154.0 | 2.287e-35 | 0.864 |
chr25:154999134 | rs6642320 | - | G>A | 20899 | 302464 | 122.5 | 1.815e-28 | 1.107 |
chr25:155104608 | rs5940618 | - | G>A | 10410 | 176623 | 120.6 | 4.763e-28 | 0.8843 |
chr25:2679949 | rs311121 | - | G>T | 8831 | 121957 | 114.7 | 8.984e-27 | 1.137 |
chr25:154935282 | rs112437556 | - | C>T | 2180 | 26641 | 112.5 | 2.779e-26 | 1.272 |
chr25:2661556 | rs73188900 | - | A>C | 785 | 17329 | 99.84 | 1.651e-23 | 0.6939 |
chr25:2644302 | rs1136470 | - | C>T | 8441 | 117373 | 92.38 | 7.141e-22 | 1.125 |
chr25:2691012 | rs142162416 | - | A>G | 2915 | 37525 | 91.69 | 1.012e-21 | 1.208 |
chr25:155058865 | rs73234550 | - | G>A | 1441 | 28570 | 91.49 | 1.121e-21 | 0.7702 |
chr25:154986418 | rs142918084 | - | C>G | 2262 | 28439 | 87.95 | 6.719e-21 | 1.233 |
chr25:2653913 | rs111628445 | - | G>A | 22296 | 359717 | 77.85 | 1.112e-18 | 0.9244 |
chr25:154974730 | rs144759332 | - | C>G | 1660 | 20539 | 75.71 | 3.291e-18 | 1.252 |
chr25:154998312 | rs306885 | - | T>G | 27600 | 408839 | 75.5 | 3.646e-18 | 1.079 |
chr25:2645366 | rs311083 | - | C>G | 19621 | 316935 | 71.8 | 2.386e-17 | 0.9254 |
chr25:2682149 | rs311128 | - | C>T | 3162 | 41899 | 69.75 | 6.739e-17 | 1.172 |
chr25:2676915 | rs311115 | - | G>C | 4636 | 63275 | 67.75 | 1.855e-16 | 1.14 |
chr25:155013081 | rs146997510 | - | T>A | 1287 | 24862 | 65.25 | 6.582e-16 | 0.792 |
chr25:2676160 | rs312232 | - | C>T | 12923 | 186675 | 63.6 | 1.523e-15 | 1.086 |
chr25:2609983 | rs2236738 | - | C>T | 20308 | 298602 | 62.58 | 2.554e-15 | 1.074 |
chr25:155183483 | rs73237015 | - | G>A | 11047 | 158895 | 59.85 | 1.025e-14 | 1.089 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:225998468 | rs4674972 | - | A>C | 13633 | 17813 | 29.49 | 5.609e-08 | 0.9312 |
chr22:36308955 | rs76120447 | RBFOX2 | C>T | 589 | 953 | 26.42 | 2.747e-07 | 0.7632 |
chr1:67752701 | rs4655533 | - | G>A | 1536 | 2214 | 21.64 | 3.282e-06 | 0.855 |
chr19:4156881 | rs350871 | CREB3L3 | G>A | 21536 | 27556 | 20.11 | 7.322e-06 | 0.9491 |
chr4:10531693 | rs76408584 | CLNK | C>T | 773 | 764 | 20.07 | 7.457e-06 | 1.258 |
chr10:92095819 | rs12571204 | - | T>C | 10391 | 12206 | 19.44 | 1.039e-05 | 1.067 |
chr15:68853062 | rs2017617 | - | T>C | 26831 | 34110 | 18.94 | 1.347e-05 | 0.9517 |
chr1:11664146 | rs80108072 | - | G>A | 1987 | 2789 | 18.69 | 1.537e-05 | 0.8787 |
chr21:43920118 | rs12482149 | SLC37A1 | C>T | 2742 | 3777 | 18.6 | 1.611e-05 | 0.8949 |
chr6:32600057 | rs35242582 | HLA-DQA1 | A>G | 12999 | 16836 | 18.59 | 1.624e-05 | 0.944 |
chr5:17728175 | rs58401277 | - | T>C | 21346 | 27275 | 18.21 | 1.977e-05 | 0.9514 |
chr4:11482224 | rs112703483 | - | A>G | 2574 | 2849 | 17.91 | 2.31e-05 | 1.125 |
chr16:186720 | rs34579344 | NPRL3 | G>A | 1795 | 2529 | 17.87 | 2.371e-05 | 0.8758 |
chr5:5190864 | rs55936747 | ADAMTS16 | G>A | 1597 | 2266 | 17.67 | 2.628e-05 | 0.8699 |
chr25:294604 | rs6603194 | - | T>C | 22993 | 27695 | 17.48 | 2.906e-05 | 1.05 |
chr2:26223547 | rs12990137 | - | A>G | 22023 | 28081 | 17.33 | 3.136e-05 | 0.9528 |
chr6:69735326 | rs17401137 | ADGRB3 | C>A | 3731 | 4226 | 17.27 | 3.236e-05 | 1.101 |
chr8:22269454 | rs75982150 | SLC39A14 | T>G | 1819 | 1974 | 17.2 | 3.366e-05 | 1.147 |
chr17:80391684 | rs4789773 | HEXD | A>G | 18149 | 23253 | 17.15 | 3.459e-05 | 0.951 |
chr16:14471261 | rs1533079 | - | G>A | 7426 | 9776 | 17.14 | 3.48e-05 | 0.9337 |