Statistics
| Case | Control |
|---|---|
| 1320 | 458874 |
Phenotype Definition
A circumscribed, solid elevation of skin with no visible fluid that is reddish (erythematous) in color. [HPO:probinson]
Top SNP Information
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
|---|---|---|---|---|---|---|---|---|
| chr12:96896410 | rs77407708 | CFAP54 | G>A | 147 | 33983 | 23.9 | 1.014e-06 | 1.51 |
| chr15:23060998 | rs74003090 | NIPA1 | G>A | 77 | 15343 | 23.74 | 1.105e-06 | 1.746 |
| chr4:27125152 | rs10027736 | - | C>T | 69 | 13391 | 23.48 | 1.259e-06 | 1.793 |
| chr19:53801482 | rs12461082 | - | C>T | 1123 | 428397 | 23.14 | 1.506e-06 | 0.8307 |
| chr21:44776521 | rs9808670 | - | A>C | 284 | 74896 | 21.98 | 2.755e-06 | 1.34 |
| chr12:96840414 | rs34426264 | - | A>G | 170 | 41392 | 20.99 | 4.619e-06 | 1.435 |
| chr6:502106 | rs75891606 | EXOC2 | A>G | 188 | 47018 | 20.44 | 6.152e-06 | 1.406 |
| chr21:44781021 | rs17004533 | - | G>A | 234 | 60454 | 20.36 | 6.4e-06 | 1.36 |
| chr6:89919388 | rs117060712 | GABRR1 | C>T | 100 | 22199 | 19.7 | 9.06e-06 | 1.567 |
| chr15:40597229 | rs4924450 | PLCB2 | A>G | 940 | 286710 | 19.41 | 1.053e-05 | 1.192 |
| chr13:26488900 | rs112967828 | ATP8A2 | T>C | 69 | 14096 | 19.36 | 1.085e-05 | 1.701 |
| chr18:2035557 | rs8089470 | - | G>A | 386 | 107577 | 18.72 | 1.513e-05 | 1.267 |
| chr19:8240413 | rs8110054 | - | A>G | 1325 | 416277 | 18.7 | 1.526e-05 | 1.177 |
| chr17:68889812 | rs113149526 | - | G>A | 153 | 37380 | 18.67 | 1.557e-05 | 1.43 |
| chr2:126788300 | rs77101722 | - | G>A | 58 | 11454 | 18.63 | 1.589e-05 | 1.762 |
| chr5:144975121 | rs17419257 | PRELID2 | G>A | 231 | 60413 | 18.61 | 1.604e-05 | 1.344 |
| chr19:8255585 | rs35407097 | - | G>T | 1498 | 475721 | 18.53 | 1.669e-05 | 1.176 |
| chr2:202450924 | rs11690866 | C2CD6 | G>A | 371 | 103360 | 18.38 | 1.805e-05 | 1.27 |
| chr19:57465041 | rs11084471 | - | A>G | 445 | 126791 | 18.25 | 1.941e-05 | 1.247 |
| chr18:48350388 | rs117177201 | MRO | C>T | 141 | 34179 | 17.91 | 2.314e-05 | 1.44 |
| chr12:96896410 | rs77407708 | CFAP54 | G>A | 147 | 33488 | 27.21 | 1.825e-07 | 1.553 |
| chr21:44776521 | rs9808670 | - | A>C | 266 | 68225 | 27.08 | 1.951e-07 | 1.399 |
| chr12:96840414 | rs34426264 | - | A>G | 170 | 40642 | 24.93 | 5.949e-07 | 1.483 |
| chr6:502106 | rs75891606 | EXOC2 | A>G | 187 | 46508 | 22.52 | 2.077e-06 | 1.432 |
| chr5:144975121 | rs17419257 | PRELID2 | G>A | 227 | 58518 | 21.93 | 2.827e-06 | 1.383 |
| chr21:44781021 | rs17004533 | - | G>A | 212 | 54171 | 21.37 | 3.78e-06 | 1.391 |
| chr2:192668645 | rs4853639 | - | T>C | 331 | 90690 | 20.9 | 4.837e-06 | 1.308 |
| chr2:126788300 | rs77101722 | - | G>A | 57 | 11159 | 19.7 | 9.064e-06 | 1.799 |
| chr2:192625855 | rs4853481 | - | C>G | 324 | 89213 | 19.59 | 9.617e-06 | 1.3 |
| chr3:34944013 | rs17032477 | - | A>G | 61 | 12127 | 19.52 | 9.932e-06 | 1.763 |
| chr6:89919388 | rs117060712 | GABRR1 | C>T | 96 | 21470 | 19.25 | 1.148e-05 | 1.573 |
| chr2:192587933 | Affx-18721333 | NABP1 | G>A | 179 | 45292 | 19.17 | 1.196e-05 | 1.402 |
| chr2:202450924 | rs11690866 | C2CD6 | G>A | 363 | 101725 | 19.02 | 1.296e-05 | 1.279 |
| chr6:170748606 | rs118016780 | - | G>A | 55 | 10717 | 18.97 | 1.33e-05 | 1.798 |
| chr1:227993113 | rs35862668 | - | C>T | 303 | 83252 | 18.72 | 1.51e-05 | 1.302 |
| chr14:20863070 | rs2945461 | TEP1 | A>G | 246 | 65666 | 18.64 | 1.575e-05 | 1.335 |
| chr21:44783295 | rs7279586 | - | A>G | 261 | 70228 | 18.59 | 1.617e-05 | 1.324 |
| chr2:228264306 | rs115528874 | - | G>A | 78 | 16832 | 18.23 | 1.959e-05 | 1.627 |
| chr13:53336874 | rs77994483 | - | G>A | 160 | 40091 | 18.08 | 2.116e-05 | 1.413 |
| chr18:48350388 | rs117177201 | MRO | C>T | 137 | 33362 | 18.08 | 2.115e-05 | 1.45 |
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
|---|---|---|---|---|---|---|---|---|
| chr12:96896410 | rs77407708 | CFAP54 | G>A | 147 | 462 | 24.77 | 6.461e-07 | 1.615 |
| chr2:192668645 | rs4853639 | - | T>C | 331 | 1244 | 23.12 | 1.52e-06 | 1.371 |
| chr21:44776521 | rs9808670 | - | A>C | 266 | 967 | 22.75 | 1.844e-06 | 1.413 |
| chr14:99304942 | rs115024731 | - | T>C | 50 | 114 | 22.45 | 2.155e-06 | 2.203 |
| chr2:192625855 | rs4853481 | - | C>G | 324 | 1219 | 22.39 | 2.226e-06 | 1.368 |
| chr12:96840414 | rs34426264 | - | A>G | 170 | 567 | 22.01 | 2.709e-06 | 1.523 |
| chr1:34928321 | rs6425895 | - | A>G | 1049 | 4601 | 20.72 | 5.305e-06 | 1.22 |
| chr10:32070331 | rs2808052 | - | A>G | 758 | 4351 | 20.55 | 5.823e-06 | 0.8081 |
| chr11:125708293 | rs12224646 | PATE4 | T>G | 390 | 1527 | 20.54 | 5.841e-06 | 1.319 |
| chr2:192587933 | Affx-18721333 | NABP1 | G>A | 179 | 616 | 20.24 | 6.844e-06 | 1.481 |
| chr4:120837103 | rs6823368 | - | A>G | 240 | 1597 | 20.08 | 7.446e-06 | 0.7226 |
| chr1:14699809 | rs76589709 | KAZN | G>A | 79 | 658 | 20.03 | 7.634e-06 | 0.5853 |
| chr4:97908904 | rs2525795 | - | C>A | 1006 | 5617 | 19.72 | 8.95e-06 | 0.8234 |
| chr2:134941155 | rs4953903 | MGAT5 | C>T | 411 | 1637 | 19.38 | 1.073e-05 | 1.301 |
| chr6:53408048 | rs114704032 | GCLC | T>C | 63 | 166 | 19.33 | 1.1e-05 | 1.909 |
| chr2:126788300 | rs77101722 | - | G>A | 57 | 146 | 19.24 | 1.154e-05 | 1.972 |
| chr1:114076322 | rs114817385 | MAGI3 | A>G | 86 | 252 | 18.85 | 1.416e-05 | 1.723 |
| chr18:48350388 | rs117177201 | MRO | C>T | 137 | 452 | 18.73 | 1.509e-05 | 1.536 |
| chr11:125568845 | rs7943903 | - | G>A | 384 | 1517 | 18.54 | 1.666e-05 | 1.303 |
| chr3:21098477 | rs970721 | - | C>T | 294 | 1119 | 18.52 | 1.682e-05 | 1.346 |
Associated Diseases ⓘ
| ID | Name | Top Correlation |
|---|---|---|
| ICD: A499 | Bacterial infection, unspecified | 1/20 |
| ID | Name | Top Correlation |
|---|---|---|
| ICD-10: A498 | Other bacterial infections of unspecified site | 0/20 |
| ICD-10: C792 | Secondary malignant neoplasm of skin | 0/20 |
| ICD-10: L980 | Pyogenic granuloma | 0/20 |