Statistics
| Case | Control |
|---|---|
| 1196 | 458998 |
Phenotype Definition
The appearance of the urine having visible material in suspension, i.e., appearing cloudy. []
Phenotype Comment
Cloudy appearance of urine may be related to the presence of bacteria, blood, sperm, crystals, or mucus.
Top SNP Information
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
|---|---|---|---|---|---|---|---|---|
| chr1:240624864 | rs17631892 | FMN2 | G>A | 160 | 42069 | 25.18 | 5.213e-07 | 1.504 |
| chr2:171398459 | rs10191038 | MYO3B | T>C | 158 | 88236 | 23.14 | 1.504e-06 | 0.6749 |
| chr6:65702597 | rs72875963 | EYS | C>T | 274 | 81133 | 21.31 | 3.897e-06 | 1.343 |
| chr21:24844175 | rs8129998 | - | C>T | 832 | 282561 | 20.89 | 4.852e-06 | 1.214 |
| chr12:25461756 | rs114453043 | - | T>G | 62 | 13614 | 20.69 | 5.404e-06 | 1.783 |
| chr23:3494094 | rs62582034 | - | C>T | 266 | 95839 | 20.61 | 5.623e-06 | 1.355 |
| chr14:29817634 | rs78727650 | - | T>C | 119 | 30698 | 20.45 | 6.119e-06 | 1.526 |
| chr8:107836805 | rs17224799 | - | C>G | 156 | 42465 | 20.41 | 6.236e-06 | 1.451 |
| chr17:15948768 | rs116847886 | NCOR1 | T>C | 161 | 44168 | 20.29 | 6.638e-06 | 1.441 |
| chr16:86943361 | rs4077676 | - | G>A | 167 | 46224 | 20.13 | 7.225e-06 | 1.431 |
| chr7:74034068 | rs77922881 | - | G>A | 268 | 79888 | 19.98 | 7.812e-06 | 1.334 |
| chr3:68094041 | rs28698507 | TAFA1 | T>C | 406 | 128585 | 19.49 | 1.013e-05 | 1.27 |
| chr12:30922028 | rs2114899 | - | G>A | 544 | 177519 | 19.49 | 1.009e-05 | 1.242 |
| chr11:114859902 | rs117745700 | - | G>A | 103 | 26018 | 19.41 | 1.056e-05 | 1.554 |
| chr15:54827508 | rs1851002 | UNC13C | G>A | 160 | 44302 | 18.81 | 1.441e-05 | 1.424 |
| chr7:47795133 | rs921631 | PKD1L1 | C>T | 1088 | 463608 | 18.76 | 1.483e-05 | 0.8399 |
| chr7:30876123 | rs10247874 | INMT-MINDY4 | G>A | 378 | 178851 | 18.73 | 1.505e-05 | 0.7857 |
| chr8:68633544 | rs13277753 | CPA6 | G>T | 335 | 161011 | 18.73 | 1.509e-05 | 0.776 |
| chr10:11864274 | rs4747947 | - | T>C | 66 | 15148 | 18.69 | 1.54e-05 | 1.706 |
| chr5:25608177 | rs35214243 | - | GT>G | 590 | 194765 | 18.67 | 1.556e-05 | 1.225 |
| chr1:240624864 | rs17631892 | FMN2 | G>A | 158 | 41034 | 25.39 | 4.676e-07 | 1.511 |
| chr23:3494094 | rs62582034 | - | C>T | 250 | 87814 | 22.24 | 2.409e-06 | 1.384 |
| chr12:25461756 | rs114453043 | - | T>G | 57 | 11853 | 22.23 | 2.415e-06 | 1.865 |
| chr2:177348686 | rs11890933 | - | A>G | 85 | 19914 | 21.53 | 3.486e-06 | 1.662 |
| chr12:30922028 | rs2114899 | - | G>A | 535 | 171492 | 21.23 | 4.075e-06 | 1.257 |
| chr16:86943361 | rs4077676 | - | G>A | 142 | 37802 | 20.18 | 7.05e-06 | 1.473 |
| chr13:42083234 | rs7985160 | - | G>T | 957 | 326880 | 19.94 | 7.975e-06 | 1.205 |
| chr14:29817634 | rs78727650 | - | T>C | 118 | 30305 | 19.9 | 8.167e-06 | 1.52 |
| chr2:171398459 | rs10191038 | MYO3B | T>C | 135 | 74668 | 19.59 | 9.574e-06 | 0.6769 |
| chr10:33623251 | rs3750733 | NRP1 | G>A | 283 | 84473 | 19.59 | 9.578e-06 | 1.323 |
| chr7:101923315 | rs3831764 | CUX1 | TC>T | 514 | 233158 | 19.55 | 9.779e-06 | 0.8025 |
| chr17:15948768 | rs116847886 | NCOR1 | T>C | 158 | 43144 | 19.4 | 1.058e-05 | 1.435 |
| chr12:30922428 | rs34049468 | - | CT>C | 769 | 258406 | 19.16 | 1.201e-05 | 1.212 |
| chr11:114859902 | rs117745700 | - | G>A | 101 | 25284 | 19.08 | 1.257e-05 | 1.555 |
| chr3:40665410 | rs77112732 | - | C>T | 88 | 21462 | 18.84 | 1.424e-05 | 1.597 |
| chr6:97898997 | rs116968815 | - | T>C | 56 | 12171 | 18.75 | 1.489e-05 | 1.784 |
| chr2:44073656 | rs41360247 | ABCG8 | T>C | 203 | 58087 | 18.73 | 1.503e-05 | 1.373 |
| chr7:74034068 | rs77922881 | - | G>A | 263 | 78355 | 18.49 | 1.712e-05 | 1.324 |
| chr7:47795133 | rs921631 | PKD1L1 | C>T | 1037 | 438547 | 18.32 | 1.872e-05 | 0.8379 |
| chr8:21331752 | rs77359058 | - | A>G | 54 | 11670 | 18.27 | 1.921e-05 | 1.789 |
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
|---|---|---|---|---|---|---|---|---|
| chr1:240624864 | rs17631892 | FMN2 | G>A | 158 | 7312 | 25.84 | 3.715e-07 | 1.522 |
| chr23:3494094 | rs62582034 | - | C>T | 250 | 14969 | 23.51 | 1.24e-06 | 1.4 |
| chr14:29817634 | rs78727650 | - | T>C | 118 | 5335 | 21.45 | 3.636e-06 | 1.55 |
| chr12:25461756 | rs114453043 | - | T>G | 57 | 2155 | 20.81 | 5.084e-06 | 1.84 |
| chr2:177348686 | rs11890933 | - | A>G | 85 | 3597 | 20.54 | 5.846e-06 | 1.651 |
| chr7:101923315 | rs3831764 | CUX1 | TC>T | 514 | 41883 | 19.68 | 9.175e-06 | 0.801 |
| chr16:86943361 | rs4077676 | - | G>A | 142 | 6799 | 19.54 | 9.837e-06 | 1.468 |
| chr12:30922028 | rs2114899 | - | G>A | 535 | 30991 | 19.49 | 1.011e-05 | 1.247 |
| chr17:41051983 | rs62078459 | - | A>G | 354 | 19511 | 19.33 | 1.098e-05 | 1.29 |
| chr11:114859902 | rs117745700 | - | G>A | 101 | 4515 | 19.16 | 1.204e-05 | 1.562 |
| chr12:30922428 | rs34049468 | - | CT>C | 769 | 46347 | 18.93 | 1.354e-05 | 1.212 |
| chr13:42083234 | rs7985160 | - | G>T | 957 | 58812 | 18.76 | 1.481e-05 | 1.2 |
| chr10:11864274 | rs4747947 | - | T>C | 65 | 2630 | 18.69 | 1.542e-05 | 1.722 |
| chr7:47795133 | rs921631 | PKD1L1 | C>T | 1037 | 78755 | 18.55 | 1.652e-05 | 0.8361 |
| chr6:97898997 | rs116968815 | - | T>C | 56 | 2178 | 18.53 | 1.674e-05 | 1.788 |
| chr17:15948768 | rs116847886 | NCOR1 | T>C | 158 | 7781 | 18.51 | 1.693e-05 | 1.427 |
| chr10:33623251 | rs3750733 | NRP1 | G>A | 283 | 15237 | 18.5 | 1.7e-05 | 1.315 |
| chr3:190022305 | rs116237436 | - | G>T | 55 | 2128 | 18.48 | 1.721e-05 | 1.796 |
| chr15:100878472 | rs11247186 | ADAMTS17 | T>C | 534 | 43210 | 18.48 | 1.714e-05 | 0.8088 |
| chr15:60920405 | rs35784313 | RORA | T>C | 222 | 20043 | 18.07 | 2.125e-05 | 0.7406 |
Associated Diseases ⓘ
| ID | Name | Top Correlation |
|---|---|---|
| ICD: K650 | Acute peritonitis | 2/20 |
| ID | Name | Top Correlation |
|---|---|---|
| ICD-10: N321 | Vesicointestinal fistula | 0/20 |
| ICD-10: N410 | Acute prostatitis | 0/20 |