Case | Control |
---|---|
121500 | 338694 |
A type of infection that is regarded as a sign of a pathological susceptibility to infection. There are five general subtypes. (i) Opportunistic infection, meaning infection by a pathogen that is not normally able to cause infection in a healthy host (e.g., pneumonia by Pneumocystis jirovecii or CMV); (ii) Unusual location (focus) of an infection (e.g., an aspergillus brain abscess); (iii) a protracted course or lack of adequate response to treatment (e.g., chronic rhinosinusitis); (iv) Unusual severity or intensity of an infection; and (v) unusual recurrence of infections. [PMID:22052638]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 18216 | 45077 | 187.7 | 1.008e-42 | 1.133 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 17514 | 43578 | 163.9 | 1.58e-37 | 1.126 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 17728 | 44233 | 158.0 | 3.026e-36 | 1.123 |
chr6:396321 | rs12203592 | IRF4 | C>T | 54537 | 146668 | 55.38 | 9.912e-14 | 1.043 |
chr2:44788309 | rs72790077 | CAMKMT | C>G | 4843 | 12079 | 41.78 | 1.022e-10 | 1.117 |
chr2:44185713 | rs17031779 | LRPPRC | T>C | 6764 | 17168 | 41.32 | 1.289e-10 | 1.098 |
chr6:421281 | rs62389423 | - | G>A | 44428 | 119608 | 40.08 | 2.436e-10 | 1.039 |
chr19:49211969 | rs676388 | - | C>T | 121004 | 341278 | 35.64 | 2.371e-09 | 0.9729 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 69346 | 197052 | 33.91 | 5.786e-09 | 0.9704 |
chr19:49214470 | rs281380 | - | T>C | 91716 | 259364 | 32.23 | 1.369e-08 | 0.9732 |
chr2:136594158 | rs2236783 | LCT | A>G | 59737 | 169939 | 31.23 | 2.291e-08 | 0.9701 |
chr19:49206172 | rs516246 | FUT2 | T>C | 127644 | 359349 | 31.21 | 2.321e-08 | 0.9747 |
chr6:26198046 | rs4145878 | AL031777.2 | T>A | 120243 | 338852 | 31.16 | 2.374e-08 | 0.9746 |
chr19:49206417 | rs492602 | FUT2 | G>A | 127402 | 358784 | 30.95 | 2.645e-08 | 0.9748 |
chr19:49214274 | rs281379 | - | A>G | 125226 | 352760 | 30.94 | 2.663e-08 | 0.9748 |
chr19:49209010 | rs503279 | FUT2 | C>T | 120591 | 339777 | 30.87 | 2.755e-08 | 0.9748 |
chr19:49206674 | rs601338 | FUT2 | A>G | 127276 | 358284 | 30.0 | 4.316e-08 | 0.9752 |
chr1:201860626 | rs2250377 | SHISA4 | G>A | 86223 | 235504 | 29.99 | 4.341e-08 | 1.027 |
chr19:49206462 | rs681343 | FUT2 | T>C | 127424 | 358730 | 29.86 | 4.654e-08 | 0.9752 |
chr19:49208865 | rs504963 | FUT2 | A>G | 121034 | 340891 | 29.81 | 4.756e-08 | 0.9752 |
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 17438 | 43164 | 188.0 | 8.873e-43 | 1.136 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 16672 | 41436 | 167.5 | 2.582e-38 | 1.131 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 16699 | 41591 | 161.8 | 4.583e-37 | 1.128 |
chr6:396321 | rs12203592 | IRF4 | C>T | 53885 | 145030 | 62.7 | 2.412e-15 | 1.046 |
chr6:421281 | rs62389423 | - | G>A | 43839 | 118026 | 47.19 | 6.455e-12 | 1.043 |
chr2:44788309 | rs72790077 | CAMKMT | C>G | 4743 | 11841 | 42.53 | 6.971e-11 | 1.12 |
chr2:136594158 | rs2236783 | LCT | A>G | 50023 | 143645 | 41.65 | 1.089e-10 | 0.9631 |
chr2:136643555 | rs309125 | - | C>T | 52030 | 149264 | 40.85 | 1.644e-10 | 0.9639 |
chr2:136407479 | rs1446585 | R3HDM1 | A>G | 57573 | 164887 | 40.84 | 1.649e-10 | 0.9652 |
chr2:44185713 | rs17031779 | LRPPRC | T>C | 6402 | 16335 | 37.16 | 1.087e-09 | 1.095 |
chr2:44073881 | rs6544713 | ABCG8 | C>T | 76824 | 218620 | 34.94 | 3.402e-09 | 0.9704 |
chr2:44074431 | rs4245791 | ABCG8 | T>C | 77616 | 220725 | 34.3 | 4.717e-09 | 0.9708 |
chr6:26198046 | rs4145878 | AL031777.2 | T>A | 111439 | 315280 | 33.38 | 7.594e-09 | 0.9729 |
chr4:151199080 | rs2290846 | LRBA | G>A | 70761 | 193101 | 32.96 | 9.423e-09 | 1.03 |
chr2:136555659 | rs2322659 | LCT | C>T | 46548 | 133394 | 32.86 | 9.923e-09 | 0.9662 |
chr2:136527443 | rs113881162 | UBXN4 | GTGAT>G | 46304 | 132609 | 31.15 | 2.383e-08 | 0.967 |
chr6:475489 | rs12210050 | - | C>T | 50053 | 135943 | 31.12 | 2.43e-08 | 1.033 |
chr4:151207127 | rs3749574 | LRBA | C>T | 77929 | 213165 | 30.48 | 3.371e-08 | 1.028 |
chr19:49211969 | rs676388 | - | C>T | 111900 | 316343 | 30.42 | 3.478e-08 | 0.9741 |
chr4:151206319 | rs6817154 | LRBA | T>C | 77926 | 213132 | 30.33 | 3.651e-08 | 1.028 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr2:44066247 | Affx-20090007 | ABCG8 | G>C | 17438 | 14935 | 124.7 | 5.795e-29 | 1.138 |
chr2:44065090 | Affx-20089987 | ABCG5 | G>A | 16672 | 14313 | 114.5 | 1.013e-26 | 1.134 |
chr2:44073656 | rs41360247 | ABCG8 | T>C | 16699 | 14376 | 109.5 | 1.292e-25 | 1.131 |
chr2:44788309 | rs72790077 | CAMKMT | C>G | 4743 | 4106 | 27.34 | 1.704e-07 | 1.119 |
chr6:24247922 | rs72830837 | DCDC2 | A>G | 19277 | 17699 | 25.73 | 3.921e-07 | 1.057 |
chr9:140111957 | rs80043545 | BX255925.3 | G>A | 25335 | 25510 | 24.8 | 6.349e-07 | 0.9543 |
chr5:31139367 | rs79713985 | - | T>C | 2354 | 2616 | 24.68 | 6.777e-07 | 0.8678 |
chr16:81583475 | rs117907179 | CMIP | A>G | 8009 | 8338 | 23.96 | 9.846e-07 | 0.925 |
chr12:10745008 | rs2607890 | - | C>T | 100800 | 95711 | 23.94 | 9.957e-07 | 1.029 |
chr8:133899160 | rs180222 | TG | C>G | 4399 | 4698 | 23.47 | 1.271e-06 | 0.9025 |
chr12:121491957 | rs12366831 | - | G>A | 34662 | 32335 | 23.34 | 1.357e-06 | 1.041 |
chr3:127715518 | rs111489708 | MGLL | C>T | 11248 | 11547 | 22.31 | 2.315e-06 | 0.9379 |
chr2:44073881 | rs6544713 | ABCG8 | C>T | 76824 | 75717 | 22.29 | 2.341e-06 | 0.9711 |
chr2:44185713 | rs17031779 | LRPPRC | T>C | 6402 | 5684 | 22.03 | 2.683e-06 | 1.09 |
chr22:49623181 | rs2858612 | - | T>C | 73303 | 72261 | 21.6 | 3.367e-06 | 0.9712 |
chr6:30983683 | rs3871466 | MUC22 | T>C | 34095 | 31845 | 21.51 | 3.528e-06 | 1.04 |
chr6:30984404 | rs3869096 | MUC22 | T>G | 34209 | 31948 | 21.48 | 3.581e-06 | 1.04 |
chr2:44074431 | rs4245791 | ABCG8 | T>C | 77616 | 76400 | 21.4 | 3.721e-06 | 0.9718 |
chr6:30983263 | rs9391701 | MUC22 | G>A | 34219 | 31972 | 20.96 | 4.683e-06 | 1.039 |
chr6:30979793 | rs9366764 | MUC22 | G>A | 34192 | 31949 | 20.69 | 5.409e-06 | 1.039 |