Case | Control |
---|---|
31283 | 428911 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 3573 | 63485 | 213.9 | 1.937e-48 | 0.7725 |
chr18:46453463 | rs4939827 | SMAD7 | T>C | 30127 | 445976 | 197.0 | 9.233e-45 | 0.8921 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 3026 | 53966 | 185.0 | 3.984e-42 | 0.7714 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 1312 | 26214 | 168.0 | 2.02e-38 | 0.6918 |
chr15:48392165 | rs1834640 | - | A>G | 1578 | 30046 | 151.8 | 7.185e-35 | 0.7256 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 882 | 18495 | 144.9 | 2.235e-33 | 0.6604 |
chr20:60921044 | rs4925386 | LAMA5 | C>T | 19979 | 298252 | 130.9 | 2.549e-30 | 0.9044 |
chr20:60958651 | rs11699160 | - | T>C | 22690 | 337001 | 129.2 | 6.07e-30 | 0.9078 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 2193 | 38954 | 127.7 | 1.293e-29 | 0.7775 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 13570 | 206601 | 127.1 | 1.801e-29 | 0.8938 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 2186 | 38794 | 126.3 | 2.646e-29 | 0.7782 |
chr9:117110112 | Affx-52344420 | AKNA | T>TG | 646 | 13933 | 121.0 | 3.781e-28 | 0.6431 |
chr17:58508582 | rs8071181 | C17orf64 | G>A | 694 | 14723 | 120.3 | 5.475e-28 | 0.6537 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 851 | 17294 | 118.7 | 1.218e-27 | 0.6819 |
chr6:3185712 | rs7754077 | - | C>T | 882 | 17790 | 118.2 | 1.604e-27 | 0.687 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 777 | 15963 | 114.8 | 8.532e-27 | 0.6746 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 5266 | 84842 | 114.6 | 9.531e-27 | 0.8534 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 13235 | 169251 | 114.3 | 1.13e-26 | 1.114 |
chr5:147671850 | rs7724380 | - | G>A | 975 | 19208 | 114.0 | 1.278e-26 | 0.7036 |
chr9:140957557 | rs11137360 | CACNA1B | A>G | 1024 | 19982 | 113.1 | 2.005e-26 | 0.7104 |
chr18:46453463 | rs4939827 | SMAD7 | T>C | 28336 | 410342 | 152.1 | 6.007e-35 | 0.9024 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 13002 | 194754 | 123.4 | 1.157e-28 | 0.893 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 12647 | 158575 | 115.7 | 5.5e-27 | 1.118 |
chr15:32994756 | rs4779584 | - | C>T | 12804 | 161371 | 103.8 | 2.269e-24 | 1.11 |
chr20:60920700 | rs6143035 | LAMA5 | T>C | 14352 | 212223 | 102.1 | 5.279e-24 | 0.9054 |
chr11:111171709 | rs3802842 | COLCA2 | A>C | 19975 | 258168 | 91.99 | 8.732e-22 | 1.089 |
chr11:111165009 | rs7103178 | - | T>C | 20016 | 258777 | 90.7 | 1.675e-21 | 1.088 |
chr8:117630683 | rs16892766 | - | A>C | 5591 | 67521 | 90.44 | 1.904e-21 | 1.149 |
chr20:60921044 | rs4925386 | LAMA5 | C>T | 18662 | 271407 | 90.21 | 2.142e-21 | 0.9177 |
chr20:60958651 | rs11699160 | - | T>C | 21159 | 306459 | 88.33 | 5.549e-21 | 0.921 |
chr20:60899182 | rs11698080 | LAMA5 | C>T | 12826 | 189274 | 88.06 | 6.361e-21 | 0.908 |
chr20:60898244 | rs57627107 | LAMA5 | A>G | 13391 | 197244 | 84.0 | 4.955e-20 | 0.9116 |
chr8:117640315 | rs11986063 | - | C>T | 6057 | 74329 | 75.54 | 3.577e-18 | 1.13 |
chr8:128413305 | rs6983267 | POU5F1B | G>T | 29063 | 413698 | 74.23 | 6.968e-18 | 0.931 |
chr18:46453754 | rs35352860 | SMAD7 | C>T | 15780 | 229743 | 74.2 | 7.058e-18 | 0.9212 |
chr11:111125512 | rs2001754 | C11orf53 | A>G | 22082 | 289098 | 68.64 | 1.184e-16 | 1.075 |
chr20:60986019 | rs2236200 | RBBP8NL | A>C | 15330 | 222975 | 67.83 | 1.784e-16 | 0.9239 |
chr8:128407443 | rs10505477 | POU5F1B | A>G | 29672 | 421360 | 67.58 | 2.024e-16 | 0.9341 |
chr15:32992658 | rs28399071 | - | G>A | 6424 | 79667 | 65.65 | 5.378e-16 | 1.117 |
chr15:33066195 | rs75798403 | FMN1 | C>A | 8799 | 110970 | 64.89 | 7.929e-16 | 1.101 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr8:143758378 | rs55783251 | JRK | G>A | 4725 | 985 | 20.43 | 6.198e-06 | 0.8475 |
chr14:73424409 | rs12434259 | DCAF4 | G>A | 6469 | 1318 | 20.12 | 7.271e-06 | 0.8658 |
chr14:58106625 | rs10782435 | SLC35F4 | T>C | 19916 | 3806 | 19.91 | 8.11e-06 | 0.9076 |
chr2:53380974 | rs10186405 | - | A>G | 7297 | 1143 | 19.86 | 8.312e-06 | 1.161 |
chr23:116128595 | rs4534289 | - | G>A | 18590 | 3205 | 19.55 | 9.819e-06 | 1.114 |
chr14:73352550 | rs80265597 | DPF3 | T>C | 6868 | 1388 | 19.37 | 1.078e-05 | 0.871 |
chr11:130387218 | rs11222141 | - | C>T | 2645 | 577 | 19.33 | 1.1e-05 | 0.8131 |
chr3:39428665 | rs56024134 | SLC25A38 | G>A | 1283 | 302 | 19.3 | 1.119e-05 | 0.7528 |
chr17:32330177 | rs9652885 | ASIC2 | C>T | 7854 | 1240 | 19.23 | 1.16e-05 | 1.153 |
chr11:111171709 | rs3802842 | COLCA2 | A>C | 19975 | 3339 | 19.11 | 1.235e-05 | 1.103 |
chr1:22698447 | rs7524102 | - | A>G | 10541 | 2073 | 19.0 | 1.304e-05 | 0.8906 |
chr11:111165009 | rs7103178 | - | T>C | 20016 | 3342 | 18.88 | 1.394e-05 | 1.102 |
chr2:234899525 | rs4663997 | TRPM8 | G>A | 1286 | 161 | 18.82 | 1.436e-05 | 1.438 |
chr1:22711473 | rs6426749 | - | G>C | 10593 | 2079 | 18.69 | 1.536e-05 | 0.8916 |
chr1:84090165 | rs12125932 | - | C>T | 8548 | 1700 | 18.52 | 1.685e-05 | 0.8835 |
chr3:79851614 | rs13062545 | - | T>C | 29691 | 5551 | 18.48 | 1.717e-05 | 0.9154 |
chr4:178201067 | rs76175875 | - | G>A | 1756 | 397 | 18.4 | 1.793e-05 | 0.7851 |
chr8:35020325 | rs4739297 | - | C>G | 5494 | 845 | 18.19 | 1.997e-05 | 1.178 |
chr1:167603062 | rs1229395 | RCSD1 | G>C | 851 | 210 | 17.85 | 2.395e-05 | 0.7211 |
chr6:41609713 | rs115919896 | MDFI | T>C | 1078 | 257 | 17.7 | 2.58e-05 | 0.745 |