Neoplasia of the pleura

0100527

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

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Statistics

Case	Control
4885	455309

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr5:33951693	rs16891982	SLC45A2	G>C	488	66570	67.71	1.892e-16	0.6832
chr5:33958959	rs28777	SLC45A2	A>C	424	56568	51.09	8.805e-13	0.7018
chr5:33951116	rs35397	SLC45A2	T>G	753	89355	40.15	2.352e-10	0.7862
chr15:78783277	rs11858836	IREB2	G>A	3424	298971	38.34	5.946e-10	1.14
chr5:33955326	rs35390	SLC45A2	A>C	306	40841	36.26	1.722e-09	0.7053
chr12:12477531	rs4763815	-	C>T	270	36780	35.77	2.217e-09	0.6919
chr15:78806023	rs8034191	HYKK	T>C	3596	315821	35.44	2.631e-09	1.132
chr15:78857939	rs55853698	CHRNA5	T>G	3574	313836	35.42	2.66e-09	1.132
chr6:136480972	rs9483910	PDE7B	C>T	135	21235	35.03	3.253e-09	0.6011
chr5:33955673	rs35391	SLC45A2	C>T	307	40673	34.75	3.748e-09	0.7108
chr17:5845873	rs16955272	AC007846.2	G>A	123	19739	34.61	4.039e-09	0.5891
chr15:78868636	rs72740964	CHRNA5	G>A	3487	305788	34.46	4.357e-09	1.132
chr15:78882925	rs16969968	CHRNA5	G>A	3528	309861	34.35	4.607e-09	1.131
chr15:78802869	rs9788721	HYKK	T>C	3710	326899	33.56	6.909e-09	1.128
chr12:50324973	rs611484	-	G>A	342	44197	33.1	8.741e-09	0.7287
chr1:862124	rs13303101	SAMD11	G>A	262	35242	32.34	1.294e-08	0.7009
chr15:78878541	rs951266	CHRNA5	G>A	3520	310056	32.28	1.332e-08	1.127
chr15:28335820	rs4778138	OCA2	A>G	1205	133570	31.98	1.556e-08	0.8402
chr15:78896129	rs1317286	CHRNA3	A>G	3586	316501	31.28	2.232e-08	1.124
chr13:72441665	rs3759505	-	C>T	101	16614	31.17	2.363e-08	0.5752
chr15:78802869	rs9788721	HYKK	T>C	3587	308990	32.66	1.1e-08	1.128
chr15:78783277	rs11858836	IREB2	G>A	3360	290006	29.31	6.175e-08	1.123
chr15:78806023	rs8034191	HYKK	T>C	3512	304017	28.47	9.508e-08	1.12
chr15:78857939	rs55853698	CHRNA5	T>G	3506	303937	27.48	1.589e-07	1.118
chr15:78826180	rs931794	HYKK	A>G	3520	305169	27.31	1.734e-07	1.117
chr15:78896129	rs1317286	CHRNA3	A>G	3491	302792	26.82	2.229e-07	1.116
chr15:78814046	rs10519203	HYKK	A>G	3517	305431	26.66	2.429e-07	1.116
chr15:78882925	rs16969968	CHRNA5	G>A	3464	300480	26.37	2.813e-07	1.115
chr15:78868636	rs72740964	CHRNA5	G>A	3423	296443	26.32	2.897e-07	1.116
chr15:78878541	rs951266	CHRNA5	G>A	3451	299621	25.87	3.644e-07	1.114
chr15:78867482	rs17486278	CHRNA5	A>C	3465	300756	25.85	3.691e-07	1.114
chr15:78857986	rs55781567	CHRNA5	C>G	3500	303875	25.82	3.741e-07	1.114
chr7:91187760	rs12536116	-	A>C	764	84859	25.72	3.942e-07	0.8255
chr15:78898723	rs12914385	CHRNA3	C>T	3967	346886	25.52	4.375e-07	1.11
chr15:78894339	rs1051730	CHRNA3	G>A	3451	300129	25.17	5.254e-07	1.113
chr2:45983392	rs1468041	PRKCE	G>T	153	9521	24.99	5.763e-07	1.503
chr15:78873993	rs7180002	CHRNA5	A>T	3445	299540	24.5	7.445e-07	1.111
chr7:89897703	rs17863057	CFAP69	A>C	391	28532	23.97	9.778e-07	1.289
chr15:78911672	rs4243084	CHRNA3	G>C	3505	305368	23.41	1.31e-06	1.108
chr17:29243402	rs117870634	ADAP2	A>G	169	22705	23.26	1.417e-06	0.6883

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr5:33951693	rs16891982	SLC45A2	G>C	488	2368	42.33	7.714e-11	0.7184
chr5:33958959	rs28777	SLC45A2	A>C	424	1990	28.77	8.171e-08	0.7464
chr12:12477531	rs4763815	-	C>T	270	1342	26.29	2.932e-07	0.7079
chr5:127265136	rs9327457	CCDC192	C>T	174	934	25.96	3.479e-07	0.6559
chr12:50324973	rs611484	-	G>A	342	1617	24.17	8.825e-07	0.7431
chr3:16991193	rs77425173	PLCL2	G>A	498	1381	23.7	1.123e-06	1.297
chr8:95175763	rs28521190	CDH17	G>T	179	937	23.44	1.29e-06	0.6729
chr9:74195202	rs117762156	-	G>A	352	930	23.39	1.325e-06	1.359
chr8:14533608	rs73202815	SGCZ	A>G	831	2452	23.17	1.483e-06	1.223
chr13:65485756	rs1588684	-	G>A	2720	8840	22.73	1.864e-06	1.13
chr17:5845873	rs16955272	AC007846.2	G>A	123	691	22.63	1.963e-06	0.6284
chr12:33458768	rs13377955	-	C>A	500	2230	22.53	2.065e-06	0.7861
chr1:1221138	rs11260578	SCNN1D	G>A	209	1059	22.2	2.461e-06	0.6985
chr10:108242222	rs10884325	-	A>G	731	3122	22.16	2.513e-06	0.8181
chr2:45983392	rs1468041	PRKCE	G>T	155	352	22.06	2.648e-06	1.572
chr2:77627190	rs13407647	LRRTM4	C>T	158	837	21.94	2.814e-06	0.6656
chr1:211250618	rs113408573	KCNH1	C>T	151	342	21.77	3.067e-06	1.576
chr17:29243402	rs117870634	ADAP2	A>G	169	879	21.36	3.816e-06	0.6775
chr15:28327835	rs4778137	OCA2	C>G	2863	11041	21.32	3.885e-06	0.8915
chr7:155086997	rs34031777	-	A>G	4470	16816	20.85	4.957e-06	0.9017
chr3:17150697	rs55641789	-	A>G	1793	5551	23.29	1.394e-06	1.156
chr17:29243402	rs117870634	ADAP2	A>G	169	863	21.4	3.722e-06	0.6768
chr3:16991193	rs77425173	PLCL2	G>A	491	1354	20.87	4.908e-06	1.279
chr18:41867582	rs17769286	-	G>C	1141	4576	20.64	5.55e-06	0.852
chr1:211250618	rs113408573	KCNH1	C>T	148	333	20.11	7.316e-06	1.557
chr2:45983392	rs1468041	PRKCE	G>T	153	348	19.79	8.643e-06	1.539
chr5:127265136	rs9327457	CCDC192	C>T	122	653	19.55	9.787e-06	0.6468
chr10:79362803	rs57526643	KCNMA1	C>T	945	3827	19.4	1.059e-05	0.8449
chr1:27050453	rs114693082	ARID1A	G>A	247	622	19.38	1.073e-05	1.396
chr7:91187760	rs12536116	-	A>C	764	3146	18.76	1.486e-05	0.8336
chr9:140758025	rs72767001	EHMT1	A>G	1965	6189	18.64	1.582e-05	1.133
chr16:52807290	rs61131526	-	G>A	59	371	18.32	1.869e-05	0.5525
chr17:28793630	rs76570178	CPD	A>G	245	1146	18.11	2.086e-05	0.739
chr18:67346440	rs12604978	DOK6	A>C	4461	16387	18.11	2.081e-05	0.9065
chr5:150432153	rs2112635	TNIP1	T>C	3189	10368	18.01	2.197e-05	1.111
chr7:11294325	rs77616119	-	G>A	97	202	17.86	2.38e-05	1.68
chr13:65485756	rs1588684	-	G>A	2685	8652	17.65	2.653e-05	1.115
chr11:121491307	rs10892760	SORL1	C>A	4707	15594	17.59	2.747e-05	1.101
chr7:89897703	rs17863057	CFAP69	A>C	391	1069	17.57	2.769e-05	1.287
chr9:4080699	rs3925024	GLIS3	T>C	2281	7281	17.56	2.791e-05	1.121

Associated Diseases ^ⓘ

ID	Name	Top Correlation
ICD: C349	Bronchus or lung, unspecified	9/20
ICD: C450	Mesothelioma of pleura	1/20
ICD: J920	Pleural plaque with presence of asbestos	2/20
ICD: J929	Pleural plaque without asbestos	3/20

ID	Name	Top Correlation
ICD-10: C459	Mesothelioma, unspecified	0/20
ICD-10: D381	Trachea, bronchus and lung	0/20
ICD-10: J948	Other specified pleural conditions	0/20
ICD-10: J984	Other disorders of lung	0/20

Neoplasia of the pleura

0100527

Normal Case/Contol ⓘ

Sibling Case/Control ⓘ

Links

Statistics

Top SNP Information Show Normal Table Show Sibling SNP

Associated Diseases ⓘ Shared SNP diseases No shared SNP diseases

Normal Case/Contol ^ⓘ

Sibling Case/Control ^ⓘ

Top SNP Information

Associated Diseases ^ⓘ