Case | Control |
---|---|
20888 | 439306 |
The presence of a fistula affecting the genitourinary system. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr18:46453463 | rs4939827 | SMAD7 | T>C | 20698 | 455405 | 67.17 | 2.486e-16 | 0.923 |
chr11:111171709 | rs3802842 | COLCA2 | A>C | 14062 | 279635 | 66.51 | 3.477e-16 | 1.089 |
chr11:111165009 | rs7103178 | - | T>C | 14089 | 280794 | 61.72 | 3.958e-15 | 1.086 |
chr11:111125512 | rs2001754 | C11orf53 | A>G | 15267 | 307381 | 48.49 | 3.312e-12 | 1.074 |
chr8:117630683 | rs16892766 | - | A>C | 3930 | 74767 | 43.35 | 4.569e-11 | 1.119 |
chr8:128413305 | rs6983267 | POU5F1B | G>T | 20309 | 442784 | 40.8 | 1.683e-10 | 0.9395 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 8754 | 173732 | 38.47 | 5.564e-10 | 1.079 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 9440 | 210731 | 37.94 | 7.29e-10 | 0.9295 |
chr8:128407443 | rs10505477 | POU5F1B | A>G | 20797 | 452344 | 37.0 | 1.18e-09 | 0.9424 |
chr11:111213944 | rs12365324 | - | G>A | 17942 | 365659 | 33.63 | 6.654e-09 | 1.059 |
chr20:60958651 | rs11699160 | - | T>C | 15701 | 343990 | 33.29 | 7.942e-09 | 0.9429 |
chr8:117640315 | rs11986063 | - | C>T | 4338 | 84187 | 31.9 | 1.624e-08 | 1.097 |
chr8:128428638 | Affx-31548678 | POU5F1B | G>A | 17234 | 376169 | 31.28 | 2.236e-08 | 0.9455 |
chr10:8701219 | rs10795668 | - | G>A | 13527 | 297104 | 30.23 | 3.828e-08 | 0.9436 |
chr11:111202486 | rs1893990 | - | C>T | 20545 | 421113 | 29.69 | 5.064e-08 | 1.055 |
chr1:204477977 | rs11240754 | - | G>A | 13546 | 297225 | 29.55 | 5.441e-08 | 0.9442 |
chr11:111179054 | rs3087587 | COLCA2 | G>A | 19409 | 421443 | 28.5 | 9.38e-08 | 0.949 |
chr8:43657313 | rs8185750 | - | G>A | 2151 | 50778 | 27.68 | 1.428e-07 | 0.8881 |
chr1:204556958 | rs12566957 | - | T>C | 15320 | 334821 | 27.26 | 1.777e-07 | 0.948 |
chr1:183028430 | rs10797828 | LAMC1 | G>A | 17397 | 378315 | 26.26 | 2.981e-07 | 0.9502 |
chr11:111171709 | rs3802842 | COLCA2 | A>C | 13366 | 264777 | 64.87 | 8.003e-16 | 1.09 |
chr18:46453463 | rs4939827 | SMAD7 | T>C | 19108 | 419570 | 63.76 | 1.406e-15 | 0.9227 |
chr11:111165009 | rs7103178 | - | T>C | 13376 | 265417 | 61.45 | 4.533e-15 | 1.088 |
chr8:117630683 | rs16892766 | - | A>C | 3692 | 69420 | 47.7 | 4.958e-12 | 1.13 |
chr11:111125512 | rs2001754 | C11orf53 | A>G | 14756 | 296424 | 45.86 | 1.272e-11 | 1.074 |
chr8:128413305 | rs6983267 | POU5F1B | G>T | 19451 | 423310 | 42.61 | 6.693e-11 | 0.9366 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 8262 | 162960 | 40.01 | 2.526e-10 | 1.083 |
chr8:128407443 | rs10505477 | POU5F1B | A>G | 19851 | 431181 | 39.76 | 2.878e-10 | 0.9387 |
chr8:117640315 | rs11986063 | - | C>T | 3999 | 76387 | 39.01 | 4.214e-10 | 1.112 |
chr10:8701219 | rs10795668 | - | G>A | 13044 | 286430 | 33.87 | 5.907e-09 | 0.9391 |
chr15:32994756 | rs4779584 | - | C>T | 8356 | 165819 | 33.09 | 8.789e-09 | 1.075 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 8955 | 198801 | 33.05 | 9.004e-09 | 0.9323 |
chr11:111213944 | rs12365324 | - | G>A | 17497 | 355982 | 30.95 | 2.646e-08 | 1.058 |
chr8:128428638 | Affx-31548678 | POU5F1B | G>A | 16460 | 358036 | 29.68 | 5.099e-08 | 0.9455 |
chr20:60958651 | rs11699160 | - | T>C | 14352 | 313266 | 28.95 | 7.411e-08 | 0.9448 |
chr1:183028430 | rs10797828 | LAMC1 | G>A | 16643 | 361503 | 28.49 | 9.424e-08 | 0.9468 |
chr15:33051684 | rs1258757 | - | C>T | 13903 | 281559 | 27.98 | 1.223e-07 | 1.058 |
chr15:32992658 | rs28399071 | - | G>A | 4209 | 81882 | 26.82 | 2.233e-07 | 1.09 |
chr10:8731255 | rs7912831 | - | T>C | 20328 | 416424 | 26.53 | 2.592e-07 | 1.053 |
chr1:204477977 | rs11240754 | - | G>A | 12415 | 271385 | 25.53 | 4.352e-07 | 0.9461 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr11:111171709 | rs3802842 | COLCA2 | A>C | 13366 | 139804 | 58.21 | 2.354e-14 | 1.087 |
chr11:111165009 | rs7103178 | - | T>C | 13376 | 140129 | 55.07 | 1.16e-13 | 1.085 |
chr18:46453463 | rs4939827 | SMAD7 | T>C | 19108 | 220539 | 53.73 | 2.295e-13 | 0.9275 |
chr8:117630683 | rs16892766 | - | A>C | 3692 | 36533 | 46.76 | 8.026e-12 | 1.132 |
chr11:111125512 | rs2001754 | C11orf53 | A>G | 14756 | 156375 | 41.81 | 1.005e-10 | 1.072 |
chr8:117640315 | rs11986063 | - | C>T | 3999 | 40249 | 37.35 | 9.873e-10 | 1.112 |
chr10:8701219 | rs10795668 | - | G>A | 13044 | 151154 | 34.62 | 4.012e-09 | 0.9372 |
chr15:33022090 | rs35330276 | GREM1 | G>A | 8262 | 86255 | 33.2 | 8.301e-09 | 1.077 |
chr8:128413305 | rs6983267 | POU5F1B | G>T | 19451 | 222176 | 31.79 | 1.716e-08 | 0.9439 |
chr1:183028430 | rs10797828 | LAMC1 | G>A | 16643 | 190882 | 30.91 | 2.702e-08 | 0.9436 |
chr8:128407443 | rs10505477 | POU5F1B | A>G | 19851 | 226285 | 29.45 | 5.729e-08 | 0.946 |
chr11:111213944 | rs12365324 | - | G>A | 17497 | 187617 | 29.35 | 6.039e-08 | 1.058 |
chr20:60968596 | rs1570027 | CABLES2 | A>G | 8955 | 104483 | 28.76 | 8.211e-08 | 0.9355 |
chr15:32994756 | rs4779584 | - | C>T | 8356 | 87783 | 26.92 | 2.115e-07 | 1.069 |
chr10:8731255 | rs7912831 | - | T>C | 20328 | 219301 | 26.38 | 2.808e-07 | 1.054 |
chr20:60958651 | rs11699160 | - | T>C | 14352 | 164876 | 26.32 | 2.887e-07 | 0.9463 |
chr15:32992658 | rs28399071 | - | G>A | 4209 | 43209 | 24.75 | 6.534e-07 | 1.088 |
chr12:51213765 | rs11169571 | ATF1 | T>C | 17301 | 186050 | 24.35 | 8.04e-07 | 1.053 |
chr12:51171090 | rs12372718 | ATF1 | A>G | 17320 | 186218 | 24.31 | 8.194e-07 | 1.053 |
chr12:51203371 | rs1129406 | ATF1 | C>T | 17340 | 186488 | 23.97 | 9.772e-07 | 1.052 |
ID | Name | Top Correlation |
---|---|---|
ICD: C187 | Sigmoid colon | 4/20 |
ICD: D125 | Sigmoid colon | 5/20 |
ICD: D128 | Rectum | 1/20 |