Case | Control |
---|---|
10304 | 449890 |
A tumor (abnormal growth of tissue) of the respiratory system. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 1083 | 65975 | 113.5 | 1.696e-26 | 0.7165 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 937 | 56055 | 86.19 | 1.635e-20 | 0.7323 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 213 | 16527 | 67.85 | 1.764e-16 | 0.5693 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 1643 | 88465 | 65.47 | 5.899e-16 | 0.8111 |
chr6:136480972 | rs9483910 | PDE7B | C>T | 305 | 21065 | 60.18 | 8.656e-15 | 0.6396 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 683 | 40464 | 57.68 | 3.078e-14 | 0.7432 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 424 | 27102 | 56.78 | 4.869e-14 | 0.6904 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 685 | 40295 | 54.97 | 1.225e-13 | 0.7487 |
chr5:9203914 | rs1805972 | SEMA5A | T>C | 603 | 36071 | 54.12 | 1.887e-13 | 0.7369 |
chr5:148191544 | rs2895794 | - | G>C | 273 | 18850 | 53.6 | 2.453e-13 | 0.6405 |
chr23:102201216 | rs725570 | - | A>G | 252 | 18718 | 47.56 | 5.337e-12 | 0.6456 |
chr1:236085940 | rs12038310 | - | C>T | 213 | 15063 | 46.53 | 9.035e-12 | 0.6258 |
chr16:28995057 | rs11859822 | SPNS1 | T>C | 478 | 28958 | 46.31 | 1.008e-11 | 0.729 |
chr5:33999671 | rs34678 | AMACR | A>G | 376 | 23688 | 46.25 | 1.04e-11 | 0.7013 |
chr15:29223282 | rs8026324 | APBA2 | T>A | 717 | 40959 | 46.01 | 1.175e-11 | 0.7717 |
chr5:83128858 | rs7709612 | - | A>G | 141 | 10953 | 44.83 | 2.153e-11 | 0.5701 |
chr9:10063634 | rs445608 | PTPRD | G>A | 343 | 21778 | 43.78 | 3.672e-11 | 0.6969 |
chr14:33956209 | rs1012023 | NPAS3 | C>A | 553 | 32507 | 43.77 | 3.69e-11 | 0.7509 |
chr9:137925543 | rs7027926 | - | G>A | 245 | 16575 | 43.67 | 3.881e-11 | 0.654 |
chr15:78783277 | rs11858836 | IREB2 | G>A | 7076 | 295319 | 43.04 | 5.363e-11 | 1.101 |
chr6:32155581 | rs204993 | PBX2 | A>G | 6940 | 285803 | 33.98 | 5.573e-09 | 1.091 |
chr6:31127562 | rs1150765 | TCF19 | C>T | 5687 | 232492 | 33.48 | 7.21e-09 | 1.096 |
chr6:31138107 | rs1062630 | POU5F1 | G>A | 5535 | 226561 | 32.92 | 9.591e-09 | 1.096 |
chr6:31147194 | rs3130457 | POU5F1 | T>C | 5599 | 228841 | 31.86 | 1.653e-08 | 1.094 |
chr6:32205942 | rs6901158 | - | C>T | 3637 | 145737 | 31.44 | 2.057e-08 | 1.109 |
chr15:78783277 | rs11858836 | IREB2 | G>A | 6931 | 286435 | 30.98 | 2.606e-08 | 1.087 |
chr6:31125978 | rs3130455 | CCHCR1 | A>T | 5331 | 217495 | 30.59 | 3.192e-08 | 1.093 |
chr6:32148031 | rs1062070 | RNF5 | A>G | 4367 | 176816 | 30.41 | 3.498e-08 | 1.1 |
chr6:31143652 | rs887465 | POU5F1 | C>G | 5570 | 228115 | 30.36 | 3.584e-08 | 1.091 |
chr6:32147696 | rs3130349 | RNF5 | G>A | 4407 | 178500 | 30.31 | 3.686e-08 | 1.099 |
chr6:32345689 | rs2894254 | - | T>G | 2914 | 115660 | 29.46 | 5.696e-08 | 1.116 |
chr15:78802869 | rs9788721 | HYKK | T>C | 7364 | 305213 | 29.15 | 6.702e-08 | 1.083 |
chr6:32151934 | rs3131300 | AGER | A>G | 4374 | 177589 | 28.93 | 7.51e-08 | 1.097 |
chr6:32290208 | rs9268235 | TSBP1 | C>T | 2955 | 117538 | 28.82 | 7.951e-08 | 1.114 |
chr6:32261252 | rs7775397 | TSBP1 | T>G | 2922 | 116200 | 28.57 | 9.032e-08 | 1.114 |
chr6:32310863 | rs2849018 | TSBP1 | T>C | 2923 | 116267 | 28.3 | 1.041e-07 | 1.113 |
chr6:31122482 | rs130076 | CCHCR1 | G>A | 5276 | 216077 | 28.25 | 1.067e-07 | 1.09 |
chr6:32325562 | rs2395149 | TSBP1 | G>A | 2918 | 116134 | 28.07 | 1.172e-07 | 1.113 |
chr6:31112737 | rs130079 | CCHCR1 | C>A | 5632 | 231420 | 27.94 | 1.253e-07 | 1.087 |
chr15:78806023 | rs8034191 | HYKK | T>C | 7238 | 300291 | 27.83 | 1.328e-07 | 1.081 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr6:31127562 | rs1150765 | TCF19 | C>T | 5687 | 128445 | 32.14 | 1.435e-08 | 1.095 |
chr6:31138107 | rs1062630 | POU5F1 | G>A | 5535 | 125069 | 31.61 | 1.887e-08 | 1.095 |
chr6:31147194 | rs3130457 | POU5F1 | T>C | 5599 | 126517 | 29.89 | 4.582e-08 | 1.091 |
chr6:32155581 | rs204993 | PBX2 | A>G | 6940 | 158346 | 29.44 | 5.774e-08 | 1.085 |
chr6:32205942 | rs6901158 | - | C>T | 3637 | 80675 | 28.85 | 7.828e-08 | 1.106 |
chr6:31125978 | rs3130455 | CCHCR1 | A>T | 5331 | 120225 | 28.72 | 8.372e-08 | 1.091 |
chr6:31143652 | rs887465 | POU5F1 | C>G | 5570 | 126108 | 28.48 | 9.458e-08 | 1.089 |
chr15:78783277 | rs11858836 | IREB2 | G>A | 6931 | 158419 | 28.36 | 1.01e-07 | 1.084 |
chr6:32147696 | rs3130349 | RNF5 | G>A | 4407 | 98803 | 27.64 | 1.46e-07 | 1.096 |
chr6:32148031 | rs1062070 | RNF5 | A>G | 4367 | 97913 | 27.49 | 1.582e-07 | 1.096 |
chr15:78802869 | rs9788721 | HYKK | T>C | 7364 | 168687 | 27.34 | 1.709e-07 | 1.081 |
chr6:31122482 | rs130076 | CCHCR1 | G>A | 5276 | 119467 | 26.5 | 2.634e-07 | 1.088 |
chr6:31112737 | rs130079 | CCHCR1 | C>A | 5632 | 127901 | 26.4 | 2.774e-07 | 1.086 |
chr6:32151934 | rs3131300 | AGER | A>G | 4374 | 98300 | 26.33 | 2.876e-07 | 1.093 |
chr6:31190303 | rs3130517 | - | T>C | 6500 | 148230 | 26.28 | 2.96e-07 | 1.082 |
chr15:78806023 | rs8034191 | HYKK | T>C | 7238 | 165985 | 25.96 | 3.494e-07 | 1.079 |
chr6:32345689 | rs2894254 | - | T>G | 2914 | 64167 | 25.91 | 3.58e-07 | 1.11 |
chr6:31177094 | rs3130953 | - | G>A | 6508 | 148598 | 25.7 | 3.987e-07 | 1.081 |
chr15:78857986 | rs55781567 | CHRNA5 | C>G | 7226 | 165818 | 25.68 | 4.036e-07 | 1.078 |
chr6:32290208 | rs9268235 | TSBP1 | C>T | 2955 | 65200 | 25.47 | 4.482e-07 | 1.108 |