Case | Control |
---|---|
8370 | 451824 |
A tumor (abnormal growth of tissue) of the tongue. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr1:159174683 | rs2814778 | ACKR1 | T>C | 550 | 18827 | 105.0 | 1.237e-24 | 1.563 |
chr10:105677897 | rs4387287 | STN1 | C>A | 3511 | 160085 | 91.45 | 1.145e-21 | 1.199 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 1355 | 55637 | 91.04 | 1.409e-21 | 1.312 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 1565 | 65493 | 90.98 | 1.451e-21 | 1.29 |
chr12:56755058 | rs4301822 | APOF | A>G | 376 | 12236 | 89.13 | 3.688e-21 | 1.64 |
chr1:169519049 | rs6025 | F5 | C>T | 588 | 21125 | 89.1 | 3.745e-21 | 1.49 |
chr17:29350769 | rs8073072 | - | T>G | 670 | 25036 | 82.07 | 1.311e-19 | 1.433 |
chr2:66725070 | rs12995572 | MEIS1 | G>C | 701 | 26450 | 81.33 | 1.913e-19 | 1.419 |
chr10:111855748 | rs10400168 | ADD3 | C>A | 391 | 13133 | 81.32 | 1.92e-19 | 1.59 |
chr6:3185712 | rs7754077 | - | C>T | 510 | 18162 | 80.59 | 2.777e-19 | 1.501 |
chr23:64367019 | rs7064929 | - | G>A | 461 | 17105 | 79.82 | 4.102e-19 | 1.531 |
chr10:105676465 | rs9420907 | STN1 | A>C | 2917 | 132333 | 79.27 | 5.408e-19 | 1.199 |
chr16:17200759 | rs8044934 | XYLT1 | G>A | 527 | 18968 | 78.61 | 7.583e-19 | 1.484 |
chr3:123436114 | rs33257 | MYLK | T>C | 434 | 15056 | 77.51 | 1.318e-18 | 1.538 |
chr5:33951116 | rs35397 | SLC45A2 | T>G | 2011 | 88097 | 76.74 | 1.951e-18 | 1.233 |
chr5:33955673 | rs35391 | SLC45A2 | C>T | 991 | 39989 | 74.72 | 5.425e-18 | 1.33 |
chr5:33955326 | rs35390 | SLC45A2 | A>C | 995 | 40152 | 74.7 | 5.483e-18 | 1.329 |
chr5:9203914 | rs1805972 | SEMA5A | T>C | 898 | 35776 | 73.8 | 8.661e-18 | 1.345 |
chr16:17200685 | rs8046024 | XYLT1 | C>T | 528 | 19249 | 73.8 | 8.657e-18 | 1.466 |
chr17:29375177 | rs6505228 | - | A>G | 599 | 22395 | 72.86 | 1.391e-17 | 1.43 |
chr1:169519049 | rs6025 | F5 | C>T | 560 | 20522 | 85.01 | 2.964e-20 | 1.49 |
chr10:105677897 | rs4387287 | STN1 | C>A | 2957 | 141170 | 51.63 | 6.718e-13 | 1.158 |
chr10:105676465 | rs9420907 | STN1 | A>C | 2488 | 118398 | 44.94 | 2.031e-11 | 1.158 |
chr10:105657316 | rs10786775 | STN1 | C>G | 1818 | 86166 | 33.25 | 8.096e-09 | 1.156 |
chr10:105659826 | rs2487999 | STN1 | C>T | 1812 | 86086 | 32.29 | 1.325e-08 | 1.153 |
chr11:270514 | rs17156153 | - | C>T | 1137 | 72069 | 31.2 | 2.327e-08 | 0.8414 |
chr11:199492 | rs72878024 | BET1L | G>A | 1040 | 66405 | 30.84 | 2.801e-08 | 0.8361 |
chr10:105631657 | rs35623220 | - | C>T | 1976 | 95014 | 29.32 | 6.138e-08 | 1.14 |
chr23:47308795 | rs17147624 | ZNF41 | A>C | 462 | 20671 | 28.65 | 8.687e-08 | 1.292 |
chr11:108359161 | rs4754317 | POGLUT3 | G>A | 2220 | 133075 | 27.91 | 1.27e-07 | 0.8857 |
chr11:108175462 | rs1801516 | ATM | G>A | 2140 | 128433 | 27.06 | 1.974e-07 | 0.8857 |
chr6:37609741 | rs804831 | MDGA1 | T>C | 4707 | 270413 | 25.62 | 4.16e-07 | 0.9159 |
chr5:1286516 | rs2736100 | TERT | C>A | 7981 | 448690 | 25.35 | 4.777e-07 | 0.9243 |
chr16:12727894 | rs7194966 | - | C>T | 7668 | 431678 | 24.29 | 8.287e-07 | 0.9257 |
chr1:169428944 | rs1208134 | CCDC181 | T>C | 1093 | 51073 | 23.82 | 1.059e-06 | 1.167 |
chr5:1279790 | rs10069690 | TERT | C>T | 4586 | 232450 | 23.79 | 1.074e-06 | 1.089 |
chr4:38474255 | rs116175659 | - | T>C | 938 | 43325 | 23.28 | 1.403e-06 | 1.178 |
chr20:43592248 | rs2868218 | - | T>C | 3163 | 158224 | 21.43 | 3.672e-06 | 1.097 |
chr16:12734368 | rs7187496 | - | G>A | 6643 | 374147 | 19.91 | 8.123e-06 | 0.9313 |
chr12:125323240 | rs12582221 | SCARB1 | G>A | 6903 | 388145 | 19.85 | 8.356e-06 | 0.9318 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr1:169519049 | rs6025 | F5 | C>T | 560 | 691 | 32.22 | 1.376e-08 | 1.386 |
chr5:162752132 | rs2901732 | - | C>T | 992 | 1381 | 23.36 | 1.343e-06 | 1.229 |
chr10:105677897 | rs4387287 | STN1 | C>A | 2957 | 4531 | 21.22 | 4.09e-06 | 1.127 |
chr7:80980302 | rs62465558 | - | C>T | 1042 | 1473 | 21.15 | 4.255e-06 | 1.211 |
chr3:30156811 | rs1946640 | - | A>C | 5180 | 9395 | 20.9 | 4.841e-06 | 0.9077 |
chr14:73372021 | rs17122159 | - | C>T | 3259 | 5034 | 20.17 | 7.097e-06 | 1.119 |
chr5:1286516 | rs2736100 | TERT | C>A | 7981 | 14121 | 20.08 | 7.429e-06 | 0.9161 |
chr23:47308795 | rs17147624 | ZNF41 | A>C | 462 | 629 | 19.72 | 8.953e-06 | 1.318 |
chr12:92770863 | rs442592 | - | T>C | 6547 | 10523 | 19.36 | 1.084e-05 | 1.093 |
chr1:162003746 | rs885091 | - | A>G | 2168 | 3275 | 19.07 | 1.261e-05 | 1.138 |
chr10:105676465 | rs9420907 | STN1 | A>C | 2488 | 3796 | 18.89 | 1.386e-05 | 1.129 |
chr1:102289362 | rs10747410 | OLFM3 | G>A | 5468 | 9818 | 18.28 | 1.91e-05 | 0.9154 |
chr20:62052011 | rs118087697 | KCNQ2 | G>A | 483 | 636 | 17.84 | 2.397e-05 | 1.294 |
chr18:6651118 | rs6417041 | - | T>C | 239 | 280 | 17.82 | 2.433e-05 | 1.451 |
chr2:146407820 | rs16825330 | - | T>C | 1536 | 2949 | 17.77 | 2.488e-05 | 0.8698 |
chr13:106156486 | rs7331364 | - | T>C | 6897 | 11109 | 17.67 | 2.632e-05 | 1.087 |
chr8:66023840 | rs12335217 | - | C>T | 483 | 1026 | 17.52 | 2.845e-05 | 0.7912 |
chr10:105631657 | rs35623220 | - | C>T | 1976 | 2988 | 17.49 | 2.888e-05 | 1.137 |
chr7:21238247 | rs6977771 | - | C>T | 7931 | 12840 | 17.44 | 2.96e-05 | 1.085 |
chr14:87500916 | rs1638721 | - | C>T | 6472 | 11518 | 17.34 | 3.122e-05 | 0.9202 |