Case | Control |
---|---|
3764 | 456430 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr1:159174683 | rs2814778 | ACKR1 | T>C | 422 | 18955 | 389.5 | 1.06e-86 | 2.609 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 534 | 26992 | 374.6 | 1.845e-83 | 2.335 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 1010 | 66048 | 334.1 | 1.224e-74 | 1.836 |
chr17:58508582 | rs8071181 | C17orf64 | G>A | 344 | 15073 | 333.9 | 1.387e-74 | 2.658 |
chr15:48392165 | rs1834640 | - | A>G | 572 | 31052 | 332.0 | 3.592e-74 | 2.173 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 381 | 17764 | 322.6 | 3.93e-72 | 2.506 |
chr23:64367019 | rs7064929 | - | G>A | 441 | 17125 | 306.1 | 1.56e-68 | 2.319 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 428 | 21515 | 302.0 | 1.203e-67 | 2.328 |
chr5:33958959 | rs28777 | SLC45A2 | A>C | 860 | 56132 | 283.7 | 1.188e-63 | 1.824 |
chr9:140957557 | rs11137360 | CACNA1B | A>G | 406 | 20600 | 279.5 | 9.568e-63 | 2.303 |
chr23:128718936 | rs2362937 | OCRL | T>C | 472 | 19479 | 279.1 | 1.152e-62 | 2.183 |
chr4:110940045 | rs4698804 | - | T>C | 367 | 17897 | 278.4 | 1.656e-62 | 2.391 |
chr9:117110112 | Affx-52344420 | AKNA | T>TG | 312 | 14267 | 275.5 | 7.316e-62 | 2.543 |
chr3:188327555 | rs7645635 | LPP | T>C | 308 | 14068 | 271.9 | 4.407e-61 | 2.542 |
chr1:173579034 | rs12065033 | AL139142.2 | C>T | 322 | 15019 | 271.5 | 5.217e-61 | 2.494 |
chr19:42392441 | rs16975619 | ARHGEF1 | T>C | 388 | 19622 | 268.6 | 2.322e-60 | 2.306 |
chr10:114925758 | rs1056877 | TCF7L2 | T>C | 277 | 12174 | 266.6 | 6.404e-60 | 2.638 |
chr19:42391425 | rs28521795 | ARHGEF1 | G>A | 370 | 18452 | 265.3 | 1.216e-59 | 2.337 |
chr8:10557760 | rs57041981 | RP1L1 | A>G | 337 | 16311 | 260.3 | 1.506e-58 | 2.405 |
chr12:56755058 | rs4301822 | APOF | A>G | 276 | 12336 | 257.1 | 7.362e-58 | 2.6 |
chr25:154935282 | rs112437556 | - | C>T | 330 | 28491 | 40.01 | 2.525e-10 | 1.429 |
chr25:155058865 | rs73234550 | - | G>A | 149 | 29862 | 39.53 | 3.238e-10 | 0.5969 |
chr25:154999134 | rs6642320 | - | G>A | 2872 | 320491 | 31.94 | 1.593e-08 | 1.147 |
chr25:155053713 | rs28884873 | - | G>A | 980 | 140069 | 31.57 | 1.92e-08 | 0.8245 |
chr25:2661556 | rs73188900 | - | A>C | 82 | 18032 | 30.37 | 3.575e-08 | 0.5464 |
chr25:154986418 | rs142918084 | - | C>G | 336 | 30365 | 28.94 | 7.483e-08 | 1.352 |
chr1:242538765 | rs12568231 | PLD5 | C>T | 243 | 21120 | 27.5 | 1.57e-07 | 1.408 |
chr3:8533326 | rs76908048 | - | G>A | 450 | 43016 | 26.51 | 2.621e-07 | 1.285 |
chr1:242544789 | rs12136980 | PLD5 | G>A | 298 | 27189 | 24.96 | 5.858e-07 | 1.344 |
chr25:2654460 | rs112372310 | - | A>G | 3466 | 446002 | 24.02 | 9.522e-07 | 0.8924 |
chr25:2644302 | rs1136470 | - | C>T | 1173 | 124641 | 23.07 | 1.565e-06 | 1.166 |
chr10:101331810 | rs34120806 | - | T>C | 461 | 45300 | 22.15 | 2.52e-06 | 1.255 |
chr23:28314351 | rs57690183 | - | C>T | 315 | 22613 | 22.11 | 2.579e-06 | 1.312 |
chr6:31501292 | rs74981283 | ATP6V1G2-DDX39B | G>C | 150 | 12473 | 21.72 | 3.152e-06 | 1.469 |
chr6:88397714 | rs79984436 | AKIRIN2 | G>A | 88 | 17324 | 21.29 | 3.941e-06 | 0.6119 |
chr6:31508069 | rs12665501 | ATP6V1G2-DDX39B | T>G | 149 | 12413 | 21.27 | 3.979e-06 | 1.465 |
chr6:31511138 | rs12662306 | ATP6V1G2-DDX39B | A>C | 148 | 12338 | 21.02 | 4.539e-06 | 1.463 |
chr8:19704859 | rs10112736 | INTS10 | G>A | 961 | 101617 | 20.61 | 5.622e-06 | 1.17 |
chr6:37297364 | rs76359756 | TBC1D22B | C>T | 166 | 14201 | 20.42 | 6.233e-06 | 1.426 |
chr25:154974730 | rs144759332 | - | C>G | 241 | 21958 | 20.01 | 7.709e-06 | 1.341 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr1:242538765 | rs12568231 | PLD5 | C>T | 243 | 2312 | 30.08 | 4.136e-08 | 1.453 |
chr23:28314351 | rs57690183 | - | C>T | 315 | 3152 | 26.63 | 2.466e-07 | 1.364 |
chr1:242544789 | rs12136980 | PLD5 | G>A | 298 | 3043 | 24.43 | 7.704e-07 | 1.356 |
chr3:8533326 | rs76908048 | - | G>A | 450 | 4908 | 22.41 | 2.201e-06 | 1.271 |
chr6:88397714 | rs79984436 | AKIRIN2 | G>A | 88 | 1992 | 22.15 | 2.525e-06 | 0.6003 |
chr4:115083815 | rs4001865 | - | G>A | 3097 | 45262 | 21.71 | 3.164e-06 | 0.8931 |
chr10:114043371 | rs41313475 | TECTB | T>C | 1205 | 14510 | 21.7 | 3.185e-06 | 1.164 |
chr9:120914460 | rs12344782 | - | G>A | 906 | 14307 | 20.25 | 6.804e-06 | 0.8484 |
chr20:38529792 | rs11699506 | - | A>G | 1815 | 27281 | 19.91 | 8.136e-06 | 0.8831 |
chr6:31501292 | rs74981283 | ATP6V1G2-DDX39B | G>C | 150 | 1409 | 19.78 | 8.679e-06 | 1.467 |
chr6:31508069 | rs12665501 | ATP6V1G2-DDX39B | T>G | 149 | 1399 | 19.63 | 9.421e-06 | 1.467 |
chr20:15543234 | rs16995996 | MACROD2 | G>A | 267 | 4792 | 19.4 | 1.06e-05 | 0.7549 |
chr4:54377597 | rs11935144 | AC058822.1 | T>C | 2165 | 32124 | 19.34 | 1.092e-05 | 0.8906 |
chr6:31511138 | rs12662306 | ATP6V1G2-DDX39B | A>C | 148 | 1395 | 19.06 | 1.269e-05 | 1.461 |
chr8:19704859 | rs10112736 | INTS10 | G>A | 961 | 11479 | 19.04 | 1.283e-05 | 1.17 |
chr9:9105380 | rs117735407 | PTPRD | A>C | 171 | 1661 | 18.71 | 1.524e-05 | 1.418 |
chr15:37409283 | rs35038739 | - | G>A | 1770 | 26526 | 18.7 | 1.528e-05 | 0.8856 |
chr4:115075550 | rs9992414 | - | G>A | 3175 | 46070 | 18.65 | 1.567e-05 | 0.9007 |
chr20:38541547 | rs34985965 | - | G>A | 1904 | 28433 | 18.4 | 1.795e-05 | 0.8891 |
chr8:19710423 | rs4921679 | - | G>C | 1261 | 15386 | 18.17 | 2.024e-05 | 1.146 |