Case | Control |
---|---|
28408 | 431786 |
An abnormality of the tonsils. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr10:49451051 | rs1623017 | FRMPD2 | C>A | 1226 | 15774 | 29.13 | 6.766e-08 | 1.175 |
chr13:19671629 | rs35021688 | - | C>T | 3965 | 55155 | 25.86 | 3.671e-07 | 1.09 |
chr13:19661785 | rs4770751 | - | T>C | 3893 | 54112 | 25.33 | 4.841e-07 | 1.09 |
chr23:36258594 | rs7879188 | CFAP47 | G>A | 3487 | 48120 | 24.79 | 6.39e-07 | 1.095 |
chr5:110523293 | rs32702 | - | C>G | 22418 | 347054 | 24.12 | 9.068e-07 | 0.9583 |
chr12:132549300 | rs7136109 | EP400 | A>G | 782 | 9848 | 23.74 | 1.105e-06 | 1.2 |
chr18:54938896 | rs7232310 | - | T>C | 16413 | 239039 | 23.38 | 1.332e-06 | 1.047 |
chr23:67891077 | rs7886230 | STARD8 | T>C | 2686 | 36747 | 23.01 | 1.609e-06 | 1.104 |
chr15:61642389 | rs4517726 | - | G>A | 6380 | 90690 | 22.77 | 1.825e-06 | 1.067 |
chr6:108659486 | rs4326264 | AFG1L | C>T | 1056 | 13693 | 22.57 | 2.027e-06 | 1.165 |
chr17:54500315 | rs17820300 | ANKFN1 | A>C | 1022 | 13230 | 22.51 | 2.089e-06 | 1.168 |
chr3:178982869 | rs1468923 | KCNMB3 | G>A | 19615 | 287417 | 22.43 | 2.179e-06 | 1.043 |
chr18:35171653 | rs12956949 | - | A>G | 22855 | 335693 | 22.19 | 2.466e-06 | 1.042 |
chr18:77563334 | rs11665567 | - | G>A | 12944 | 187821 | 22.18 | 2.485e-06 | 1.049 |
chr8:134473155 | rs74381719 | ST3GAL1 | C>T | 1545 | 26281 | 22.1 | 2.582e-06 | 0.8828 |
chr9:132257622 | rs72768007 | - | C>A | 3327 | 46206 | 22.02 | 2.701e-06 | 1.09 |
chr18:26692515 | rs72908257 | - | A>G | 4986 | 80192 | 21.95 | 2.795e-06 | 0.9311 |
chr2:102659769 | rs72817861 | - | G>A | 14493 | 226098 | 21.82 | 2.991e-06 | 0.9551 |
chr18:54920558 | rs4800968 | - | T>C | 14621 | 212944 | 21.81 | 3.014e-06 | 1.047 |
chr2:230526908 | rs7587835 | DNER | T>C | 1672 | 22427 | 21.8 | 3.024e-06 | 1.127 |
chr9:132257622 | rs72768007 | - | C>A | 3265 | 45540 | 23.85 | 1.044e-06 | 1.095 |
chr18:54938896 | rs7232310 | - | T>C | 14885 | 218327 | 22.65 | 1.943e-06 | 1.048 |
chr18:54920558 | rs4800968 | - | T>C | 13764 | 201771 | 22.64 | 1.953e-06 | 1.049 |
chr5:165758259 | rs1392381 | - | A>G | 12704 | 200510 | 21.89 | 2.891e-06 | 0.9526 |
chr13:19671629 | rs35021688 | - | C>T | 3426 | 48158 | 21.05 | 4.476e-06 | 1.087 |
chr18:54943951 | rs2193280 | - | A>G | 14156 | 207918 | 20.73 | 5.292e-06 | 1.047 |
chr20:1609256 | rs2209311 | - | C>A | 27488 | 426266 | 20.7 | 5.358e-06 | 0.9613 |
chr3:132058350 | rs11706011 | ACP3 | T>A | 9353 | 135987 | 20.62 | 5.596e-06 | 1.055 |
chr12:107940359 | rs117553123 | BTBD11 | C>T | 1058 | 18501 | 20.12 | 7.28e-06 | 0.8667 |
chr18:26692515 | rs72908257 | - | A>G | 4832 | 78202 | 20.1 | 7.334e-06 | 0.9329 |
chr2:63149557 | rs2710642 | EHBP1 | A>G | 18104 | 282989 | 19.59 | 9.599e-06 | 0.9597 |
chr6:51920888 | rs12664407 | PKHD1 | A>G | 9158 | 145390 | 19.43 | 1.042e-05 | 0.9494 |
chr2:178025962 | rs6706797 | - | C>T | 8620 | 137160 | 19.32 | 1.105e-05 | 0.9484 |
chr13:19661785 | rs4770751 | - | T>C | 3425 | 48266 | 19.32 | 1.107e-05 | 1.083 |
chr5:165737894 | rs17466466 | - | G>A | 9520 | 150781 | 18.9 | 1.379e-05 | 0.9509 |
chr10:17242035 | rs4748362 | TRDMT1 | A>C | 25172 | 374390 | 18.87 | 1.402e-05 | 1.039 |
chr20:57459868 | rs76602912 | GNAS | T>C | 1498 | 20299 | 18.73 | 1.506e-05 | 1.125 |
chr8:134473155 | rs74381719 | ST3GAL1 | C>T | 1507 | 25613 | 18.43 | 1.766e-05 | 0.8911 |
chr7:47406661 | rs2462624 | TNS3 | T>C | 10140 | 160371 | 18.37 | 1.817e-05 | 0.9527 |
chr11:33814175 | rs79708249 | - | G>A | 5108 | 73144 | 18.28 | 1.904e-05 | 1.067 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr20:1609256 | rs2209311 | - | C>A | 27488 | 54435 | 28.95 | 7.438e-08 | 0.9458 |
chr17:997035 | rs2260849 | ABR | G>A | 21595 | 42931 | 24.71 | 6.661e-07 | 0.9485 |
chr18:54920558 | rs4800968 | - | T>C | 13764 | 25329 | 24.33 | 8.124e-07 | 1.062 |
chr9:132257622 | rs72768007 | - | C>A | 3265 | 5657 | 24.28 | 8.339e-07 | 1.118 |
chr18:54938896 | rs7232310 | - | T>C | 14885 | 27432 | 24.06 | 9.349e-07 | 1.06 |
chr18:54943951 | rs2193280 | - | A>G | 14156 | 26076 | 23.76 | 1.089e-06 | 1.06 |
chr8:603745 | rs56091506 | ERICH1 | T>C | 1787 | 2994 | 22.31 | 2.322e-06 | 1.154 |
chr15:25323626 | rs117974199 | - | G>T | 802 | 1873 | 21.44 | 3.647e-06 | 0.8215 |
chr1:236000022 | rs115307118 | LYST | C>T | 751 | 1166 | 21.43 | 3.677e-06 | 1.243 |
chr4:92766659 | rs78722438 | - | T>C | 856 | 1983 | 20.89 | 4.87e-06 | 0.8285 |
chr19:10155721 | rs78140887 | - | C>G | 647 | 991 | 20.69 | 5.406e-06 | 1.259 |
chr9:133295361 | rs78880657 | HMCN2 | C>T | 9596 | 19437 | 20.51 | 5.937e-06 | 0.9398 |
chr7:113993814 | rs116872707 | FOXP2 | C>T | 537 | 1299 | 20.03 | 7.623e-06 | 0.7943 |
chr8:127810194 | rs16901700 | - | T>C | 3603 | 7562 | 19.54 | 9.835e-06 | 0.9116 |
chr17:10707241 | rs1078643 | TMEM238L | A>G | 14080 | 26035 | 19.45 | 1.032e-05 | 1.055 |
chr14:26203387 | rs8019471 | - | G>A | 2667 | 4630 | 19.28 | 1.129e-05 | 1.115 |
chr12:96486620 | rs61938795 | - | T>G | 8152 | 14837 | 19.25 | 1.146e-05 | 1.067 |
chr18:54853977 | rs1943401 | - | A>G | 16524 | 30775 | 19.13 | 1.223e-05 | 1.052 |
chr12:41008557 | rs112393536 | - | G>A | 2053 | 3512 | 18.72 | 1.514e-05 | 1.13 |
chr13:95125945 | rs117696930 | DCT | T>C | 1886 | 3211 | 18.59 | 1.62e-05 | 1.135 |
ID | Name | Top Correlation |
---|---|---|
ICD: J039 | Acute tonsillitis, unspecified | 1/20 |
ICD: M549 | Dorsalgia, unspecified | 2/20 |