Case | Control |
---|---|
7767 | 452427 |
An abnormality of the placenta, the organ that connects the developing fetus to the uterine wall to enable nutrient uptake, waste elimination, and gas exchange. [HPO:probinson]
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr24:14850341 | rs2032598 | USP9Y | T>C | 41 | 2771 | 1044.0 | 5.211e-229 | 41.22 |
chr1:159174683 | rs2814778 | ACKR1 | T>C | 849 | 18528 | 756.5 | 1.588e-166 | 2.593 |
chr15:48426484 | rs1426654 | SLC24A5 | A>G | 1080 | 26446 | 735.5 | 5.83e-162 | 2.325 |
chr8:145639681 | rs1871534 | SLC39A4 | G>C | 786 | 17359 | 681.3 | 3.514e-150 | 2.557 |
chr15:48392165 | rs1834640 | - | A>G | 1149 | 30475 | 633.4 | 9.14e-140 | 2.146 |
chr17:58508582 | rs8071181 | C17orf64 | G>A | 685 | 14732 | 628.9 | 8.659e-139 | 2.618 |
chr19:42393286 | rs717225 | ARHGEF1 | A>G | 864 | 21079 | 590.6 | 1.86e-130 | 2.317 |
chr8:10557760 | rs57041981 | RP1L1 | A>G | 703 | 15945 | 572.5 | 1.572e-126 | 2.483 |
chr1:173579034 | rs12065033 | AL139142.2 | C>T | 664 | 14677 | 572.0 | 2.096e-126 | 2.542 |
chr6:136480972 | rs9483910 | PDE7B | C>T | 839 | 20531 | 568.4 | 1.278e-125 | 2.307 |
chr2:66725070 | rs12995572 | MEIS1 | G>C | 986 | 26165 | 540.1 | 1.815e-119 | 2.133 |
chr15:45556163 | rs8023604 | SLC28A2 | T>C | 576 | 12335 | 532.4 | 8.469e-118 | 2.618 |
chr15:45491394 | rs1648299 | SHF | T>C | 704 | 16455 | 532.3 | 9.065e-118 | 2.405 |
chr5:33951693 | rs16891982 | SLC45A2 | G>C | 1963 | 65095 | 532.2 | 9.553e-118 | 1.74 |
chr9:117110112 | Affx-52344420 | AKNA | T>TG | 624 | 13955 | 522.5 | 1.216e-115 | 2.508 |
chr19:42391425 | rs28521795 | ARHGEF1 | G>A | 746 | 18076 | 516.6 | 2.376e-114 | 2.322 |
chr5:147863034 | rs9325101 | HTR4 | A>G | 683 | 16057 | 509.3 | 8.946e-113 | 2.39 |
chr19:42392441 | rs16975619 | ARHGEF1 | T>C | 775 | 19235 | 504.9 | 8.19e-112 | 2.268 |
chr13:72463541 | rs1460465 | - | A>G | 663 | 15461 | 503.7 | 1.499e-111 | 2.408 |
chr9:129979758 | rs3780318 | RALGPS1 | G>A | 666 | 15575 | 502.8 | 2.29e-111 | 2.402 |
chr25:155058865 | rs73234550 | - | G>A | 323 | 29688 | 69.73 | 6.793e-17 | 0.6262 |
chr25:154986418 | rs142918084 | - | C>G | 687 | 30014 | 57.02 | 4.324e-14 | 1.347 |
chr25:154999134 | rs6642320 | - | G>A | 5862 | 317501 | 55.13 | 1.126e-13 | 1.135 |
chr25:2661556 | rs73188900 | - | A>C | 191 | 17923 | 44.26 | 2.879e-11 | 0.6172 |
chr25:154998098 | rs145347644 | - | T>C | 1580 | 78426 | 43.56 | 4.121e-11 | 1.193 |
chr25:2692710 | rs2259750 | - | A>G | 2556 | 166046 | 41.15 | 1.412e-10 | 0.8691 |
chr25:154935282 | rs112437556 | - | C>T | 622 | 28199 | 40.11 | 2.398e-10 | 1.299 |
chr25:2682149 | rs311128 | - | C>T | 921 | 44140 | 36.17 | 1.811e-09 | 1.229 |
chr25:2644302 | rs1136470 | - | C>T | 2377 | 123437 | 34.84 | 3.586e-09 | 1.142 |
chr25:155085824 | rs1969622 | - | G>C | 1891 | 124824 | 33.77 | 6.191e-09 | 0.8662 |
chr25:155104608 | rs5940618 | - | G>A | 2891 | 184142 | 29.83 | 4.706e-08 | 0.8925 |
chr25:2679949 | rs311121 | - | G>T | 2438 | 128350 | 29.32 | 6.144e-08 | 1.128 |
chr25:2653913 | rs111628445 | - | G>A | 6118 | 375895 | 28.73 | 8.329e-08 | 0.915 |
chr25:155013081 | rs146997510 | - | T>A | 335 | 25814 | 26.79 | 2.27e-07 | 0.7507 |
chr25:2654460 | rs112372310 | - | A>G | 7272 | 442196 | 26.41 | 2.758e-07 | 0.92 |
chr25:154974730 | rs144759332 | - | C>G | 472 | 21727 | 26.26 | 2.982e-07 | 1.273 |
chr8:29619096 | rs7388292 | - | T>C | 2648 | 168678 | 26.1 | 3.234e-07 | 0.8959 |
chr3:189458003 | rs78253230 | TP63 | G>A | 936 | 46423 | 24.64 | 6.899e-07 | 1.184 |
chr15:27682831 | rs3922613 | GABRG3 | T>C | 5185 | 285755 | 23.1 | 1.54e-06 | 1.086 |
chr25:155009856 | rs700449 | - | C>T | 5836 | 323308 | 23.05 | 1.575e-06 | 1.084 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
---|---|---|---|---|---|---|---|---|
chr25:155058865 | rs73234550 | - | G>A | 323 | 7246 | 39.88 | 2.701e-10 | 0.6969 |
chr25:154998098 | rs145347644 | - | T>C | 1580 | 21953 | 25.77 | 3.856e-07 | 1.15 |
chr10:53874789 | rs117757955 | PRKG1 | A>G | 314 | 3722 | 23.98 | 9.746e-07 | 1.336 |
chr5:4929407 | rs48128 | - | A>G | 5415 | 80745 | 23.46 | 1.272e-06 | 1.088 |
chr3:189458003 | rs78253230 | TP63 | G>A | 936 | 12571 | 23.19 | 1.464e-06 | 1.183 |
chr8:29619096 | rs7388292 | - | T>C | 2648 | 45454 | 22.68 | 1.918e-06 | 0.9007 |
chr15:27682831 | rs3922613 | GABRG3 | T>C | 5185 | 77291 | 22.43 | 2.175e-06 | 1.087 |
chr25:154999134 | rs6642320 | - | G>A | 5862 | 88286 | 22.15 | 2.526e-06 | 1.086 |
chr4:57904387 | rs11133472 | IGFBP7 | C>T | 4912 | 81876 | 21.75 | 3.099e-06 | 0.9203 |
chr4:190466290 | rs72716864 | - | T>C | 5836 | 96567 | 21.67 | 3.238e-06 | 0.9235 |
chr25:154986418 | rs142918084 | - | C>G | 687 | 9045 | 21.09 | 4.371e-06 | 1.205 |
chr25:2661556 | rs73188900 | - | A>C | 191 | 4210 | 20.93 | 4.772e-06 | 0.7124 |
chr2:119322077 | rs76896472 | - | G>A | 770 | 14256 | 20.2 | 6.965e-06 | 0.8433 |
chr2:212512446 | rs10932390 | ERBB4 | G>C | 2283 | 39313 | 19.95 | 7.944e-06 | 0.9011 |
chr6:32209027 | rs382259 | - | T>C | 3435 | 50507 | 19.89 | 8.212e-06 | 1.093 |
chr23:48763481 | rs717193 | SLC35A2 | G>A | 6068 | 78721 | 19.84 | 8.4e-06 | 1.079 |
chr10:4089273 | rs11252295 | - | G>A | 1629 | 28550 | 19.82 | 8.528e-06 | 0.8871 |
chr3:175722327 | rs1320287 | - | C>T | 389 | 7686 | 19.76 | 8.763e-06 | 0.7917 |
chr10:29569927 | rs55646467 | - | A>G | 2593 | 37696 | 18.94 | 1.346e-05 | 1.102 |
chr15:27711355 | rs8024896 | GABRG3 | A>G | 3197 | 46966 | 18.94 | 1.351e-05 | 1.093 |