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ICD-10
HPO
Compare GWAS
Super Class
Other bacterial intestinal infections
Sub Class
Other specified bacterial intestinal infections
A04.8
Case/Control GWAS
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Links
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Interactive Plot
Statistics
Case
Control
1903
458302
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr15:48426484
rs1426654
SLC24A5
A>G
280
27246
213.9
1.928e-48
2.41
chr15:48392165
rs1834640
-
A>G
303
31321
197.9
5.972e-45
2.268
chr8:145639681
rs1871534
SLC39A4
G>C
201
17944
187.1
1.385e-42
2.603
chr1:159174683
rs2814778
ACKR1
T>C
207
19170
176.5
2.758e-40
2.506
chr19:42393286
rs717225
ARHGEF1
A>G
224
21719
171.5
3.409e-39
2.399
chr5:33951693
rs16891982
SLC45A2
G>C
509
66552
164.7
1.072e-37
1.82
chr19:42392441
rs16975619
ARHGEF1
T>C
206
19804
160.7
8.151e-37
2.413
chr5:147863034
rs9325101
HTR4
A>G
181
16559
159.0
1.834e-36
2.532
chr18:9536315
rs14336
RALBP1
A>C
150
12717
155.4
1.163e-35
2.718
chr19:42391425
rs28521795
ARHGEF1
G>A
195
18627
154.1
2.202e-35
2.424
chr19:39575987
rs544041
ACP7
G>A
130
10367
153.3
3.263e-35
2.885
chr19:42392310
rs2288509
ARHGEF1
C>T
185
17359
152.0
6.49e-35
2.462
chr9:129979758
rs3780318
RALGPS1
G>A
174
16067
149.1
2.75e-34
2.503
chr17:21433779
rs7207358
-
T>C
159
14138
148.4
3.789e-34
2.595
chr1:864757
rs2340588
SAMD11
A>G
188
18035
148.2
4.296e-34
2.42
chr8:145754187
rs115228909
C8orf82
C>G
159
14178
147.3
6.862e-34
2.586
chr17:58508582
rs8071181
C17orf64
G>A
167
15250
146.4
1.08e-33
2.526
chr1:25555672
rs10903036
SYF2
C>T
153
13460
146.3
1.121e-33
2.621
chr2:66725070
rs12995572
MEIS1
G>C
250
26901
145.9
1.381e-33
2.163
chr9:129984107
rs3739553
RALGPS1
G>A
166
15247
143.7
4.138e-33
2.512
chr17:14218051
rs75880448
HS3ST3B1
G>A
69
8929
27.56
1.525e-07
1.877
chr16:54403388
rs7206352
-
G>T
605
119956
26.72
2.357e-07
1.258
chr8:54672131
rs72655181
ATP6V1H
G>A
92
36550
24.41
7.784e-07
0.5967
chr2:137506456
rs116053818
-
C>T
133
21050
24.27
8.364e-07
1.542
chr6:79258987
rs72904019
-
C>A
115
17745
23.59
1.192e-06
1.58
chr11:130709087
rs948082
-
G>A
82
32212
20.75
5.233e-06
0.6042
chr11:7949707
rs111488559
OR10A6
A>G
230
41493
20.03
7.614e-06
1.355
chr12:58289512
rs35871063
-
CT>C
236
42930
19.57
9.712e-06
1.346
chr16:73007044
rs80126120
ZFHX3
G>C
133
22023
19.38
1.069e-05
1.473
chr11:134925231
rs80184168
-
C>A
183
31995
19.27
1.135e-05
1.394
chr11:134792047
rs76868057
-
A>G
191
33811
19.08
1.252e-05
1.382
chr13:108035046
rs79406068
FAM155A
C>G
100
36814
19.06
1.266e-05
0.6444
chr4:45018583
rs13142647
-
A>G
823
172813
18.85
1.416e-05
1.187
chr5:21649344
rs17839343
-
T>C
425
83672
18.82
1.436e-05
1.25
chr2:106580116
rs17032064
-
C>T
664
136123
18.46
1.734e-05
1.203
chr3:73398221
rs58157616
-
A>G
1462
383700
18.43
1.758e-05
0.8659
chr16:358773
rs6600211
AXIN1
G>A
1918
429246
18.41
1.777e-05
1.15
chr1:199980772
rs6663479
-
T>C
456
90440
18.22
1.969e-05
1.238
chr7:35479570
rs79411619
-
A>T
86
13228
18.12
2.076e-05
1.588
chr15:24812059
rs12914828
-
G>T
647
133078
18.06
2.144e-05
1.202
chr17:14218051
rs75880448
HS3ST3B1
G>A
69
8929
27.56
1.525e-07
1.877
chr16:54403388
rs7206352
-
G>T
605
119956
26.72
2.357e-07
1.258
chr8:54672131
rs72655181
ATP6V1H
G>A
92
36550
24.41
7.784e-07
0.5967
chr2:137506456
rs116053818
-
C>T
133
21050
24.27
8.364e-07
1.542
chr6:79258987
rs72904019
-
C>A
115
17745
23.59
1.192e-06
1.58
chr11:130709087
rs948082
-
G>A
82
32212
20.75
5.233e-06
0.6042
chr11:7949707
rs111488559
OR10A6
A>G
230
41493
20.03
7.614e-06
1.355
chr12:58289512
rs35871063
-
CT>C
236
42930
19.57
9.712e-06
1.346
chr16:73007044
rs80126120
ZFHX3
G>C
133
22023
19.38
1.069e-05
1.473
chr11:134925231
rs80184168
-
C>A
183
31995
19.27
1.135e-05
1.394
chr11:134792047
rs76868057
-
A>G
191
33811
19.08
1.252e-05
1.382
chr13:108035046
rs79406068
FAM155A
C>G
100
36814
19.06
1.266e-05
0.6444
chr4:45018583
rs13142647
-
A>G
823
172813
18.85
1.416e-05
1.187
chr5:21649344
rs17839343
-
T>C
425
83672
18.82
1.436e-05
1.25
chr2:106580116
rs17032064
-
C>T
664
136123
18.46
1.734e-05
1.203
chr3:73398221
rs58157616
-
A>G
1462
383700
18.43
1.758e-05
0.8659
chr16:358773
rs6600211
AXIN1
G>A
1918
429246
18.41
1.777e-05
1.15
chr1:199980772
rs6663479
-
T>C
456
90440
18.22
1.969e-05
1.238
chr7:35479570
rs79411619
-
A>T
86
13228
18.12
2.076e-05
1.588
chr15:24812059
rs12914828
-
G>T
647
133078
18.06
2.144e-05
1.202
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
3/20
HP: 0000152
Abnormality of head or neck
2/20
HP: 0000234
Abnormality of the head
2/20
HP: 0001739
Abnormality of the nasopharynx
7/20
HP: 0002014
Diarrhea
6/20
HP: 0002037
Inflammation of the large intestine
1/20
HP: 0002086
Abnormality of the respiratory system
2/20
HP: 0002088
Abnormal lung morphology
2/20
HP: 0002205
Recurrent respiratory infections
4/20
HP: 0002242
Abnormal intestine morphology
3/20
HP: 0002244
Abnormality of the small intestine
5/20
HP: 0002250
Abnormal large intestine morphology
6/20
HP: 0002715
Abnormality of the immune system
1/20
HP: 0002788
Recurrent upper respiratory tract infections
7/20
HP: 0004386
Gastrointestinal inflammation
4/20
HP: 0005208
Secretory diarrhea
18/20
HP: 0006562
Viral hepatitis
11/20
HP: 0010978
Abnormality of immune system physiology
2/20
HP: 0011024
Abnormality of the gastrointestinal tract
5/20
HP: 0012115
Hepatitis
11/20
HP: 0012252
Abnormal respiratory system morphology
2/20
HP: 0012647
Abnormal inflammatory response
2/20
HP: 0012649
Increased inflammatory response
2/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
3/20
HP: 0012719
Functional abnormality of the gastrointestinal tract
4/20
HP: 0025032
Abnormality of digestive system physiology
1/20
ID
Name
Top Correlation
HP: 0000271
Abnormality of the face
0/20
HP: 0000366
Abnormality of the nose
0/20
HP: 0000600
Abnormality of the pharynx
0/20
HP: 0001392
Abnormality of the liver
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002583
Colitis
0/20
HP: 0002719
Recurrent infections
0/20
HP: 0011458
Abdominal symptom
0/20
HP: 0011472
Abnormality of small intestinal villus morphology
0/20
HP: 0011473
Villous atrophy
0/20
HP: 0011947
Respiratory tract infection
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0031071
Abnormal endocrine morphology
0/20
HP: 0032101
Unusual infection
0/20
HP: 0100279
Ulcerative colitis
0/20
HP: 0100280
Crohn's disease
0/20
HP: 0100281
Chronic colitis
0/20
HP: 0410042
Abnormal liver morphology
0/20