Case | Control |
---|---|
111 | 460094 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds Ratio |
---|---|---|---|---|---|---|---|---|
chr1:111131395 | rs7545347 | KCNA2 | C>A | 41 | 66117 | 34.23 | 4.894e-09 | 2.612 |
chr6:130006382 | rs75900084 | ARHGAP18 | T>G | 12 | 10296 | 32.88 | 9.817e-09 | 4.671 |
chr11:80377052 | rs17140547 | - | C>T | 14 | 13705 | 30.45 | 3.422e-08 | 4.057 |
chr6:32065023 | rs41270461 | TNXB | C>T | 29 | 43027 | 29.06 | 7.013e-08 | 2.77 |
chr13:67973403 | rs115549365 | - | G>A | 13 | 12706 | 28.36 | 1.006e-07 | 4.054 |
chr6:31860832 | rs115699278 | EHMT2 | C>T | 12 | 11244 | 28.05 | 1.181e-07 | 4.218 |
chr6:11790591 | rs73721814 | ADTRP | A>G | 13 | 13114 | 27.25 | 1.792e-07 | 3.958 |
chr20:5866726 | rs1287046 | - | G>T | 16 | 18151 | 26.94 | 2.104e-07 | 3.513 |
chr2:99207180 | rs12988976 | INPP4A | A>G | 21 | 28368 | 25.97 | 3.471e-07 | 3.019 |
chr6:31725978 | rs28399976 | MSH5 | C>G | 14 | 15070 | 25.87 | 3.661e-07 | 3.685 |
chr19:16855265 | rs812847 | NWD1 | A>G | 159 | 451160 | 25.74 | 3.904e-07 | 1.901 |
chr21:14717531 | rs17239865 | - | C>A | 11 | 10537 | 24.94 | 5.905e-07 | 4.131 |
chr2:181616340 | rs71425682 | - | A>G | 17 | 20943 | 24.68 | 6.765e-07 | 3.249 |
chr21:34848358 | rs117910425 | IFNGR2 | A>G | 17 | 21462 | 24.02 | 9.523e-07 | 3.204 |
chr6:47311798 | rs6458559 | - | C>T | 24 | 36007 | 23.9 | 1.013e-06 | 2.736 |
chr14:104460497 | rs45456198 | TDRD9 | T>C | 11 | 10349 | 23.87 | 1.031e-06 | 4.025 |
chr18:2990853 | rs191472010 | LPIN2 | A>G | 13 | 14032 | 23.81 | 1.061e-06 | 3.658 |
chr7:131022096 | rs117152241 | MKLN1 | A>C | 16 | 19837 | 23.71 | 1.12e-06 | 3.28 |
chr6:31590746 | rs3993757 | PRRC2A | C>T | 15 | 17672 | 23.53 | 1.228e-06 | 3.371 |
chr21:14595742 | rs55776382 | - | G>A | 13 | 14201 | 23.39 | 1.325e-06 | 3.621 |
chr13:67973403 | rs115549365 | - | G>A | 12 | 9954 | 38.69 | 4.957e-10 | 5.221 |
chr1:111131395 | rs7545347 | KCNA2 | C>A | 32 | 49545 | 35.17 | 3.015e-09 | 2.946 |
chr1:239670937 | rs11807305 | CHRM3 | A>G | 11 | 9203 | 34.98 | 3.325e-09 | 5.156 |
chr21:34848358 | rs117910425 | IFNGR2 | A>G | 17 | 20541 | 30.69 | 3.034e-08 | 3.688 |
chr7:131022096 | rs117152241 | MKLN1 | A>C | 16 | 19482 | 28.88 | 7.698e-08 | 3.679 |
chr18:2990853 | rs191472010 | LPIN2 | A>G | 13 | 13723 | 28.62 | 8.795e-08 | 4.097 |
chr6:31725978 | rs28399976 | MSH5 | C>G | 13 | 13950 | 27.91 | 1.269e-07 | 4.035 |
chr3:189801456 | rs1403419 | P3H2 | C>T | 7 | 4998 | 27.86 | 1.301e-07 | 5.948 |
chr6:31860832 | rs115699278 | EHMT2 | C>T | 11 | 10717 | 27.65 | 1.455e-07 | 4.421 |
chr3:189779340 | rs1007051 | P3H2 | A>C | 7 | 5109 | 27.38 | 1.673e-07 | 5.875 |
chr6:32065023 | rs41270461 | TNXB | C>T | 24 | 37149 | 26.25 | 2.994e-07 | 2.88 |
chr5:172657953 | rs3132142 | - | C>T | 18 | 24178 | 26.0 | 3.407e-07 | 3.267 |
chr4:93198845 | rs8180202 | - | A>G | 40 | 78421 | 25.46 | 4.507e-07 | 2.352 |
chr4:93021985 | rs4558830 | - | C>T | 28 | 47270 | 25.12 | 5.394e-07 | 2.65 |
chr5:132821391 | rs114849637 | FSTL4 | G>A | 19 | 26887 | 24.83 | 6.272e-07 | 3.108 |
chr6:31590746 | rs3993757 | PRRC2A | C>T | 13 | 15033 | 24.54 | 7.268e-07 | 3.74 |
chr17:11671913 | rs2277658 | DNAH9 | G>C | 5 | 3081 | 24.38 | 7.917e-07 | 6.85 |
chr4:93141641 | rs10516904 | - | G>A | 33 | 60890 | 24.34 | 8.08e-07 | 2.46 |
chr8:6419345 | rs116956286 | MCPH1 | C>T | 12 | 13337 | 24.0 | 9.61e-07 | 3.859 |
chr4:93073857 | rs28420844 | - | T>C | 31 | 56075 | 23.79 | 1.073e-06 | 2.491 |
chr13:67973403 | rs115549365 | - | G>A | 12 | 9954 | 38.69 | 4.957e-10 | 5.221 |
chr1:111131395 | rs7545347 | KCNA2 | C>A | 32 | 49545 | 35.17 | 3.015e-09 | 2.946 |
chr1:239670937 | rs11807305 | CHRM3 | A>G | 11 | 9203 | 34.98 | 3.325e-09 | 5.156 |
chr21:34848358 | rs117910425 | IFNGR2 | A>G | 17 | 20541 | 30.69 | 3.034e-08 | 3.688 |
chr7:131022096 | rs117152241 | MKLN1 | A>C | 16 | 19482 | 28.88 | 7.698e-08 | 3.679 |
chr18:2990853 | rs191472010 | LPIN2 | A>G | 13 | 13723 | 28.62 | 8.795e-08 | 4.097 |
chr6:31725978 | rs28399976 | MSH5 | C>G | 13 | 13950 | 27.91 | 1.269e-07 | 4.035 |
chr3:189801456 | rs1403419 | P3H2 | C>T | 7 | 4998 | 27.86 | 1.301e-07 | 5.948 |
chr6:31860832 | rs115699278 | EHMT2 | C>T | 11 | 10717 | 27.65 | 1.455e-07 | 4.421 |
chr3:189779340 | rs1007051 | P3H2 | A>C | 7 | 5109 | 27.38 | 1.673e-07 | 5.875 |
chr6:32065023 | rs41270461 | TNXB | C>T | 24 | 37149 | 26.25 | 2.994e-07 | 2.88 |
chr5:172657953 | rs3132142 | - | C>T | 18 | 24178 | 26.0 | 3.407e-07 | 3.267 |
chr4:93198845 | rs8180202 | - | A>G | 40 | 78421 | 25.46 | 4.507e-07 | 2.352 |
chr4:93021985 | rs4558830 | - | C>T | 28 | 47270 | 25.12 | 5.394e-07 | 2.65 |
chr5:132821391 | rs114849637 | FSTL4 | G>A | 19 | 26887 | 24.83 | 6.272e-07 | 3.108 |
chr6:31590746 | rs3993757 | PRRC2A | C>T | 13 | 15033 | 24.54 | 7.268e-07 | 3.74 |
chr17:11671913 | rs2277658 | DNAH9 | G>C | 5 | 3081 | 24.38 | 7.917e-07 | 6.85 |
chr4:93141641 | rs10516904 | - | G>A | 33 | 60890 | 24.34 | 8.08e-07 | 2.46 |
chr8:6419345 | rs116956286 | MCPH1 | C>T | 12 | 13337 | 24.0 | 9.61e-07 | 3.859 |
chr4:93073857 | rs28420844 | - | T>C | 31 | 56075 | 23.79 | 1.073e-06 | 2.491 |
ID | Name | Top Correlation |
---|---|---|
HP: 0020071 | Viremia | 1/20 |
HP: 0031035 | Chronic infection | 4/20 |
HP: 0032248 | Persistent viremia | 2/20 |