Case | Control |
---|---|
132 | 460062 |
Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds Ratio |
---|---|---|---|---|---|---|---|---|
chr8:134552834 | rs117199764 | ST3GAL1 | C>T | 12 | 9812 | 30.17 | 3.967e-08 | 4.402 |
chr6:11519651 | rs72834780 | - | C>T | 13 | 11773 | 27.7 | 1.42e-07 | 3.986 |
chr19:40729096 | rs147729392 | CNTD2 | C>G | 13 | 12097 | 27.34 | 1.708e-07 | 3.961 |
chr20:55946446 | rs75125314 | RAE1 | A>G | 14 | 13416 | 27.11 | 1.919e-07 | 3.776 |
chr6:32191544 | rs9469093 | NOTCH4 | C>T | 15 | 15362 | 25.82 | 3.747e-07 | 3.538 |
chr4:96198186 | rs79399430 | UNC5C | C>T | 12 | 11042 | 24.86 | 6.18e-07 | 3.911 |
chr6:17975793 | rs9477561 | KIF13A | A>G | 48 | 85147 | 24.75 | 6.54e-07 | 2.159 |
chr14:61842791 | rs78328312 | PRKCH | G>T | 13 | 12752 | 24.13 | 9.008e-07 | 3.676 |
chr7:51645228 | rs73123381 | - | T>C | 15 | 15952 | 24.11 | 9.103e-07 | 3.406 |
chr3:141712296 | rs11569212 | TFDP2 | C>T | 12 | 11336 | 23.78 | 1.082e-06 | 3.81 |
chr9:119058748 | rs143025231 | PAPPA | T>G | 12 | 11452 | 23.3 | 1.384e-06 | 3.765 |
chr16:671919 | rs117996073 | RAB40C | G>A | 21 | 27114 | 23.06 | 1.572e-06 | 2.835 |
chr3:117192806 | rs16827025 | - | G>T | 25 | 35323 | 22.57 | 2.028e-06 | 2.609 |
chr9:33374082 | rs4879689 | - | G>A | 29 | 43800 | 22.47 | 2.129e-06 | 2.458 |
chr10:58545825 | rs10763405 | - | C>T | 162 | 425090 | 22.43 | 2.181e-06 | 1.761 |
chr4:123317646 | rs76229865 | ADAD1 | T>C | 12 | 12266 | 20.89 | 4.875e-06 | 3.538 |
chr6:100715906 | rs34003196 | - | T>C | 16 | 19145 | 20.43 | 6.196e-06 | 3.025 |
chr2:40405427 | rs17025449 | SLC8A1 | G>T | 19 | 24783 | 20.37 | 6.385e-06 | 2.793 |
chr10:54065821 | rs7100461 | - | G>A | 40 | 71896 | 20.0 | 7.764e-06 | 2.11 |
chr18:45115834 | rs62095962 | - | G>A | 42 | 76672 | 19.97 | 7.871e-06 | 2.08 |
chr8:134552834 | rs117199764 | ST3GAL1 | C>T | 12 | 9552 | 31.48 | 2.013e-08 | 4.531 |
chr3:117192806 | rs16827025 | - | G>T | 25 | 31239 | 29.61 | 5.281e-08 | 2.973 |
chr6:11519651 | rs72834780 | - | C>T | 13 | 11316 | 29.59 | 5.335e-08 | 4.156 |
chr20:55946446 | rs75125314 | RAE1 | A>G | 14 | 12814 | 29.34 | 6.059e-08 | 3.964 |
chr9:119058748 | rs143025231 | PAPPA | T>G | 12 | 10466 | 27.15 | 1.878e-07 | 4.131 |
chr4:96198186 | rs79399430 | UNC5C | C>T | 12 | 10651 | 26.42 | 2.753e-07 | 4.063 |
chr11:1945174 | rs78662878 | TNNT3 | T>C | 17 | 18910 | 25.52 | 4.384e-07 | 3.304 |
chr9:33374082 | rs4879689 | - | G>A | 29 | 41643 | 25.44 | 4.566e-07 | 2.602 |
chr7:51645228 | rs73123381 | - | T>C | 15 | 15571 | 25.22 | 5.127e-07 | 3.498 |
chr9:34942510 | rs7848532 | - | A>C | 173 | 460117 | 25.2 | 5.168e-07 | 1.895 |
chr14:61842791 | rs78328312 | PRKCH | G>T | 13 | 12524 | 24.91 | 6.005e-07 | 3.751 |
chr16:671919 | rs117996073 | RAB40C | G>A | 21 | 26563 | 24.11 | 9.079e-07 | 2.904 |
chr23:19477290 | rs113965915 | MAP3K15 | G>A | 12 | 11898 | 23.68 | 1.136e-06 | 3.845 |
chr9:34798371 | rs10814153 | - | C>A | 55 | 321375 | 23.16 | 1.489e-06 | 0.4896 |
chr14:24869751 | rs34077103 | NYNRIN | C>T | 96 | 218666 | 22.62 | 1.971e-06 | 1.821 |
chr6:17975793 | rs9477561 | KIF13A | A>G | 46 | 82938 | 22.59 | 2.006e-06 | 2.124 |
chr9:34917851 | rs2279790 | - | G>A | 170 | 456180 | 22.37 | 2.251e-06 | 1.82 |
chr3:141712296 | rs11569212 | TFDP2 | C>T | 11 | 10326 | 22.01 | 2.71e-06 | 3.829 |
chr23:73543879 | rs667313 | - | C>T | 43 | 80738 | 21.76 | 3.095e-06 | 2.194 |
chr20:42851472 | rs76935057 | - | T>G | 9 | 7575 | 21.57 | 3.417e-06 | 4.248 |
ID | Name | Top Correlation |
---|---|---|
HP: 0012192 | Cutaneous T-cell lymphoma | 2/20 |
HP: 0012192 | Cutaneous T-cell lymphoma | 2/20 |