Streptococcus pneumoniae as the cause of diseases classified to other chapters
B95.3
Case/Control GWAS ⓘ
Statistics
| Case | Control |
|---|---|
| 181 | 460024 |
Top SNP Information
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds Ratio |
|---|---|---|---|---|---|---|---|---|
| chr16:52521628 | rs12447430 | TOX3 | T>C | 18 | 11274 | 41.49 | 1.187e-10 | 4.183 |
| chr3:88287780 | rs115821203 | - | C>T | 22 | 18488 | 29.93 | 4.478e-08 | 3.124 |
| chr4:26523683 | rs80161225 | - | T>C | 25 | 23030 | 28.03 | 1.195e-07 | 2.85 |
| chr3:87997315 | rs73141257 | - | A>G | 37 | 40823 | 27.94 | 1.254e-07 | 2.423 |
| chr4:156086975 | rs34920623 | - | T>C | 25 | 24557 | 26.64 | 2.455e-07 | 2.785 |
| chr5:151594068 | rs114111755 | - | G>C | 26 | 25057 | 26.59 | 2.51e-07 | 2.732 |
| chr5:165670991 | rs116253457 | - | G>A | 17 | 13801 | 24.63 | 6.941e-07 | 3.206 |
| chr3:97764285 | rs62263062 | - | G>A | 15 | 11550 | 24.03 | 9.462e-07 | 3.373 |
| chr4:32800767 | rs76743381 | - | G>A | 30 | 32641 | 23.64 | 1.162e-06 | 2.447 |
| chr13:93216205 | rs117792154 | GPC5 | C>T | 16 | 12860 | 23.62 | 1.176e-06 | 3.232 |
| chr2:238416611 | rs75393846 | MLPH | G>A | 30 | 32505 | 23.61 | 1.183e-06 | 2.445 |
| chr3:74550090 | rs77510786 | CNTN3 | G>A | 22 | 20993 | 23.24 | 1.427e-06 | 2.76 |
| chr4:147787491 | rs112435425 | TTC29 | G>A | 18 | 15573 | 23.04 | 1.586e-06 | 3.012 |
| chr10:3754958 | rs61831119 | - | C>T | 73 | 109141 | 22.98 | 1.641e-06 | 1.847 |
| chr3:88358364 | rs74516955 | - | G>A | 27 | 28336 | 22.81 | 1.785e-06 | 2.511 |
| chr5:179400232 | rs74662248 | RNF130 | C>T | 14 | 10681 | 22.8 | 1.794e-06 | 3.398 |
| chr4:147879151 | rs76522161 | - | C>T | 23 | 22708 | 22.28 | 2.362e-06 | 2.654 |
| chr17:58470711 | rs76511193 | USP32 | G>A | 20 | 18580 | 22.08 | 2.613e-06 | 2.81 |
| chr17:58637160 | rs75562716 | - | G>A | 19 | 17280 | 21.99 | 2.74e-06 | 2.87 |
| chr10:82368978 | rs77956036 | SH2D4B | C>A | 30 | 33616 | 21.68 | 3.22e-06 | 2.361 |
| chr16:52521628 | rs12447430 | TOX3 | T>C | 17 | 11051 | 37.17 | 1.084e-09 | 4.051 |
| chr4:26523683 | rs80161225 | - | T>C | 25 | 22662 | 29.37 | 5.97e-08 | 2.922 |
| chr5:151594068 | rs114111755 | - | G>C | 25 | 23436 | 27.48 | 1.591e-07 | 2.828 |
| chr3:88287780 | rs115821203 | - | C>T | 21 | 18240 | 27.02 | 2.013e-07 | 3.038 |
| chr5:165670991 | rs116253457 | - | G>A | 17 | 13515 | 25.91 | 3.579e-07 | 3.298 |
| chr3:97764285 | rs62263062 | - | G>A | 15 | 11297 | 25.29 | 4.932e-07 | 3.473 |
| chr3:74550090 | rs77510786 | CNTN3 | G>A | 22 | 20357 | 25.15 | 5.292e-07 | 2.871 |
| chr5:94255381 | rs17084284 | MCTP1 | C>T | 21 | 18934 | 25.11 | 5.426e-07 | 2.929 |
| chr13:93216205 | rs117792154 | GPC5 | C>T | 16 | 12636 | 24.67 | 6.793e-07 | 3.314 |
| chr4:147879151 | rs76522161 | - | C>T | 22 | 20499 | 24.48 | 7.52e-07 | 2.833 |
| chr3:87997315 | rs73141257 | - | A>G | 35 | 40219 | 24.13 | 9.021e-07 | 2.336 |
| chr4:147787491 | rs112435425 | TTC29 | G>A | 18 | 15398 | 23.83 | 1.05e-06 | 3.069 |
| chr5:179400232 | rs74662248 | RNF130 | C>T | 14 | 10501 | 23.76 | 1.09e-06 | 3.481 |
| chr10:82368978 | rs77956036 | SH2D4B | C>A | 29 | 31085 | 23.73 | 1.106e-06 | 2.489 |
| chr4:32800767 | rs76743381 | - | G>A | 29 | 31612 | 23.07 | 1.562e-06 | 2.459 |
| chr17:58470711 | rs76511193 | USP32 | G>A | 20 | 18373 | 22.89 | 1.72e-06 | 2.863 |
| chr4:147919958 | rs17022256 | - | C>T | 22 | 21194 | 22.83 | 1.773e-06 | 2.741 |
| chr17:58637160 | rs75562716 | - | G>A | 19 | 17088 | 22.77 | 1.823e-06 | 2.924 |
| chr6:132776049 | rs17794511 | STX7 | A>C | 23 | 22620 | 22.73 | 1.868e-06 | 2.684 |
| chr3:21302572 | rs114689400 | - | C>T | 15 | 12113 | 22.19 | 2.475e-06 | 3.236 |
Associated Phenotypes ⓘ
| ID | Name | Top Correlation |
|---|